Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1

Mycobacterium sp.Spyr1 is a newly isolated strain that occurs in a creosote contaminated site in Greece. It was isolated by an enrichment method using pyrene as sole carbon and energy source and is capable of degrading a wide range of PAH substrates including pyrene, fluoranthene, fluorene, anthrace...

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Autores principales: Kallimanis, Aristeidis, Karabika, Eugenia, Mavromatis, Kostantinos, Lapidus, Alla, LaButti, Kurt M., Liolios, Konstantinos, Ivanova, Natalia, Goodwin, Lynne, Woyke, Tanja, Velentzas, Athanasios D., Perisynakis, Angelos, Ouzounis, Christos C., Kyrpides, Nikos C., Koukkou, Anna I., Drainas, Constantin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2011
Materias:
Short Genome Reports
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236039/
https://www.ncbi.nlm.nih.gov/pubmed/22180818
http://dx.doi.org/10.4056/sigs.2265047
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author Kallimanis, Aristeidis
Karabika, Eugenia
Mavromatis, Kostantinos
Lapidus, Alla
LaButti, Kurt M.
Liolios, Konstantinos
Ivanova, Natalia
Goodwin, Lynne
Woyke, Tanja
Velentzas, Athanasios D.
Perisynakis, Angelos
Ouzounis, Christos C.
Kyrpides, Nikos C.
Koukkou, Anna I.
Drainas, Constantin
author_facet Kallimanis, Aristeidis
Karabika, Eugenia
Mavromatis, Kostantinos
Lapidus, Alla
LaButti, Kurt M.
Liolios, Konstantinos
Ivanova, Natalia
Goodwin, Lynne
Woyke, Tanja
Velentzas, Athanasios D.
Perisynakis, Angelos
Ouzounis, Christos C.
Kyrpides, Nikos C.
Koukkou, Anna I.
Drainas, Constantin
author_sort Kallimanis, Aristeidis
collection PubMed
description Mycobacterium sp.Spyr1 is a newly isolated strain that occurs in a creosote contaminated site in Greece. It was isolated by an enrichment method using pyrene as sole carbon and energy source and is capable of degrading a wide range of PAH substrates including pyrene, fluoranthene, fluorene, anthracene and acenapthene. Here we describe the genomic features of this organism, together with the complete sequence and annotation. The genome consists of a 5,547,747 bp chromosome and two plasmids, a larger and a smaller one with sizes of 211,864 and 23,681 bp, respectively. In total, 5,588 genes were predicted and annotated.
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spelling pubmed-32360392011-12-16 Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1 Kallimanis, Aristeidis Karabika, Eugenia Mavromatis, Kostantinos Lapidus, Alla LaButti, Kurt M. Liolios, Konstantinos Ivanova, Natalia Goodwin, Lynne Woyke, Tanja Velentzas, Athanasios D. Perisynakis, Angelos Ouzounis, Christos C. Kyrpides, Nikos C. Koukkou, Anna I. Drainas, Constantin Stand Genomic Sci Short Genome Reports Mycobacterium sp.Spyr1 is a newly isolated strain that occurs in a creosote contaminated site in Greece. It was isolated by an enrichment method using pyrene as sole carbon and energy source and is capable of degrading a wide range of PAH substrates including pyrene, fluoranthene, fluorene, anthracene and acenapthene. Here we describe the genomic features of this organism, together with the complete sequence and annotation. The genome consists of a 5,547,747 bp chromosome and two plasmids, a larger and a smaller one with sizes of 211,864 and 23,681 bp, respectively. In total, 5,588 genes were predicted and annotated. Michigan State University 2011-10-01 /pmc/articles/PMC3236039/ /pubmed/22180818 http://dx.doi.org/10.4056/sigs.2265047 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Kallimanis, Aristeidis
Karabika, Eugenia
Mavromatis, Kostantinos
Lapidus, Alla
LaButti, Kurt M.
Liolios, Konstantinos
Ivanova, Natalia
Goodwin, Lynne
Woyke, Tanja
Velentzas, Athanasios D.
Perisynakis, Angelos
Ouzounis, Christos C.
Kyrpides, Nikos C.
Koukkou, Anna I.
Drainas, Constantin
Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1
title Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1
title_full Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1
title_fullStr Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1
title_full_unstemmed Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1
title_short Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1
title_sort complete genome sequence of mycobacterium sp. strain (spyr1) and reclassification to mycobacterium gilvum spyr1
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236039/
https://www.ncbi.nlm.nih.gov/pubmed/22180818
http://dx.doi.org/10.4056/sigs.2265047
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