Cargando…
Complete genome sequence of Tolumonas auensis type strain (TA 4(T))
Tolumonas auensis Fischer-Romero et al. 1996 is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene from phenylalanine and other phenyl precursors, as well as phenol from tyrosine. This is o...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Michigan State University
2011
|
| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236046/ https://www.ncbi.nlm.nih.gov/pubmed/22180815 http://dx.doi.org/10.4056/sigs.2184986 |
| _version_ | 1782218679764647936 |
|---|---|
| author | Chertkov, Olga Copeland, Alex Lucas, Susan Lapidus, Alla Berry, Kerrie W. Detter, John C. Del Rio, Tijana Glavina Hammon, Nancy Dalin, Eileen Tice, Hope Pitluck, Sam Richardson, Paul Bruce, David Goodwin, Lynne Han, Cliff Tapia, Roxanne Saunders, Elizabeth Schmutz, Jeremy Brettin, Thomas Larimer, Frank Land, Miriam Hauser, Loren Spring, Stefan Rohde, Manfred Kyrpides, Nikos C. Ivanova, Natalia Göker, Markus Beller, Harry R. Klenk, Hans-Peter Woyke, Tanja |
| author_facet | Chertkov, Olga Copeland, Alex Lucas, Susan Lapidus, Alla Berry, Kerrie W. Detter, John C. Del Rio, Tijana Glavina Hammon, Nancy Dalin, Eileen Tice, Hope Pitluck, Sam Richardson, Paul Bruce, David Goodwin, Lynne Han, Cliff Tapia, Roxanne Saunders, Elizabeth Schmutz, Jeremy Brettin, Thomas Larimer, Frank Land, Miriam Hauser, Loren Spring, Stefan Rohde, Manfred Kyrpides, Nikos C. Ivanova, Natalia Göker, Markus Beller, Harry R. Klenk, Hans-Peter Woyke, Tanja |
| author_sort | Chertkov, Olga |
| collection | PubMed |
| description | Tolumonas auensis Fischer-Romero et al. 1996 is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene from phenylalanine and other phenyl precursors, as well as phenol from tyrosine. This is of interest because toluene is normally considered to be a tracer of anthropogenic pollution in lakes, but T. auensis represents a biogenic source of toluene. Other than Aeromonas hydrophila subsp. hydrophila, T. auensis strain TA 4(T) is the only other member in the family Aeromonadaceae with a completely sequenced type-strain genome. The 3,471,292 bp chromosome with a total of 3,288 protein-coding and 116 RNA genes was sequenced as part of the DOE Joint Genome Institute Program JBEI 2008. |
| format | Online Article Text |
| id | pubmed-3236046 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2011 |
| publisher | Michigan State University |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-32360462011-12-16 Complete genome sequence of Tolumonas auensis type strain (TA 4(T)) Chertkov, Olga Copeland, Alex Lucas, Susan Lapidus, Alla Berry, Kerrie W. Detter, John C. Del Rio, Tijana Glavina Hammon, Nancy Dalin, Eileen Tice, Hope Pitluck, Sam Richardson, Paul Bruce, David Goodwin, Lynne Han, Cliff Tapia, Roxanne Saunders, Elizabeth Schmutz, Jeremy Brettin, Thomas Larimer, Frank Land, Miriam Hauser, Loren Spring, Stefan Rohde, Manfred Kyrpides, Nikos C. Ivanova, Natalia Göker, Markus Beller, Harry R. Klenk, Hans-Peter Woyke, Tanja Stand Genomic Sci Short Genome Reports Tolumonas auensis Fischer-Romero et al. 1996 is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene from phenylalanine and other phenyl precursors, as well as phenol from tyrosine. This is of interest because toluene is normally considered to be a tracer of anthropogenic pollution in lakes, but T. auensis represents a biogenic source of toluene. Other than Aeromonas hydrophila subsp. hydrophila, T. auensis strain TA 4(T) is the only other member in the family Aeromonadaceae with a completely sequenced type-strain genome. The 3,471,292 bp chromosome with a total of 3,288 protein-coding and 116 RNA genes was sequenced as part of the DOE Joint Genome Institute Program JBEI 2008. Michigan State University 2011-09-23 /pmc/articles/PMC3236046/ /pubmed/22180815 http://dx.doi.org/10.4056/sigs.2184986 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Short Genome Reports Chertkov, Olga Copeland, Alex Lucas, Susan Lapidus, Alla Berry, Kerrie W. Detter, John C. Del Rio, Tijana Glavina Hammon, Nancy Dalin, Eileen Tice, Hope Pitluck, Sam Richardson, Paul Bruce, David Goodwin, Lynne Han, Cliff Tapia, Roxanne Saunders, Elizabeth Schmutz, Jeremy Brettin, Thomas Larimer, Frank Land, Miriam Hauser, Loren Spring, Stefan Rohde, Manfred Kyrpides, Nikos C. Ivanova, Natalia Göker, Markus Beller, Harry R. Klenk, Hans-Peter Woyke, Tanja Complete genome sequence of Tolumonas auensis type strain (TA 4(T)) |
| title | Complete genome sequence of Tolumonas auensis type strain (TA 4(T)) |
| title_full | Complete genome sequence of Tolumonas auensis type strain (TA 4(T)) |
| title_fullStr | Complete genome sequence of Tolumonas auensis type strain (TA 4(T)) |
| title_full_unstemmed | Complete genome sequence of Tolumonas auensis type strain (TA 4(T)) |
| title_short | Complete genome sequence of Tolumonas auensis type strain (TA 4(T)) |
| title_sort | complete genome sequence of tolumonas auensis type strain (ta 4(t)) |
| topic | Short Genome Reports |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236046/ https://www.ncbi.nlm.nih.gov/pubmed/22180815 http://dx.doi.org/10.4056/sigs.2184986 |
| work_keys_str_mv | AT chertkovolga completegenomesequenceoftolumonasauensistypestrainta4t AT copelandalex completegenomesequenceoftolumonasauensistypestrainta4t AT lucassusan completegenomesequenceoftolumonasauensistypestrainta4t AT lapidusalla completegenomesequenceoftolumonasauensistypestrainta4t AT berrykerriew completegenomesequenceoftolumonasauensistypestrainta4t AT detterjohnc completegenomesequenceoftolumonasauensistypestrainta4t AT delriotijanaglavina completegenomesequenceoftolumonasauensistypestrainta4t AT hammonnancy completegenomesequenceoftolumonasauensistypestrainta4t AT dalineileen completegenomesequenceoftolumonasauensistypestrainta4t AT ticehope completegenomesequenceoftolumonasauensistypestrainta4t AT pitlucksam completegenomesequenceoftolumonasauensistypestrainta4t AT richardsonpaul completegenomesequenceoftolumonasauensistypestrainta4t AT brucedavid completegenomesequenceoftolumonasauensistypestrainta4t AT goodwinlynne completegenomesequenceoftolumonasauensistypestrainta4t AT hancliff completegenomesequenceoftolumonasauensistypestrainta4t AT tapiaroxanne completegenomesequenceoftolumonasauensistypestrainta4t AT saunderselizabeth completegenomesequenceoftolumonasauensistypestrainta4t AT schmutzjeremy completegenomesequenceoftolumonasauensistypestrainta4t AT brettinthomas completegenomesequenceoftolumonasauensistypestrainta4t AT larimerfrank completegenomesequenceoftolumonasauensistypestrainta4t AT landmiriam completegenomesequenceoftolumonasauensistypestrainta4t AT hauserloren completegenomesequenceoftolumonasauensistypestrainta4t AT springstefan completegenomesequenceoftolumonasauensistypestrainta4t AT rohdemanfred completegenomesequenceoftolumonasauensistypestrainta4t AT kyrpidesnikosc completegenomesequenceoftolumonasauensistypestrainta4t AT ivanovanatalia completegenomesequenceoftolumonasauensistypestrainta4t AT gokermarkus completegenomesequenceoftolumonasauensistypestrainta4t AT bellerharryr completegenomesequenceoftolumonasauensistypestrainta4t AT klenkhanspeter completegenomesequenceoftolumonasauensistypestrainta4t AT woyketanja completegenomesequenceoftolumonasauensistypestrainta4t |