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Standardization of whole slide image morphologic assessment with definition of a new application: Digital slide dynamic morphometry
BACKGROUND: In histopathology, the quantitative assessment of various morphologic features is based on methods originally conceived on specific areas observed through the microscope used. Failure to reproduce the same reference field of view using a different microscope will change the score assesse...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Medknow Publications & Media Pvt Ltd
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3237062/ https://www.ncbi.nlm.nih.gov/pubmed/22200031 http://dx.doi.org/10.4103/2153-3539.86830 |
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author | Puppa, Giacomo Risio, Mauro Sheahan, Kieran Vieth, Michael Zlobec, Inti Lugli, Alessandro Pecori, Sara Wang, Lai Mun Langner, Cord Mitomi, Hiroyuki Nakamura, Takatoshi Watanabe, Masahiko Ueno, Hideki Chasle, Jacques Senore, Carlo Conley, Stephen A. Herlin, Paulette Lauwers, Gregory Y. |
author_facet | Puppa, Giacomo Risio, Mauro Sheahan, Kieran Vieth, Michael Zlobec, Inti Lugli, Alessandro Pecori, Sara Wang, Lai Mun Langner, Cord Mitomi, Hiroyuki Nakamura, Takatoshi Watanabe, Masahiko Ueno, Hideki Chasle, Jacques Senore, Carlo Conley, Stephen A. Herlin, Paulette Lauwers, Gregory Y. |
author_sort | Puppa, Giacomo |
collection | PubMed |
description | BACKGROUND: In histopathology, the quantitative assessment of various morphologic features is based on methods originally conceived on specific areas observed through the microscope used. Failure to reproduce the same reference field of view using a different microscope will change the score assessed. Visualization of a digital slide on a screen through a dedicated viewer allows selection of the magnification. However, the field of view is rectangular, unlike the circular field of optical microscopy. In addition, the size of the selected area is not evident, and must be calculated. MATERIALS AND METHODS: A digital slide morphometric system was conceived to reproduce the various methods published for assessing tumor budding in colorectal cancer. Eighteen international experts in colorectal cancer were invited to participate in a web-based study by assessing tumor budding with five different methods in 100 digital slides. RESULTS: The specific areas to be tested by each method were marked by colored circles. The areas were grouped in a target-like pattern and then saved as an .xml file. When a digital slide was opened, the .xml file was imported in order to perform the measurements. Since the morphometric tool is composed of layers that can be freely moved on top of the digital slide, the technique was named digital slide dynamic morphometry. Twelve investigators completed the task, the majority of them performing the multiple evaluations of each of the cases in less than 12 minutes. CONCLUSIONS: Digital slide dynamic morphometry has various potential applications and might be a useful tool for the assessment of histologic parameters originally conceived for optical microscopy that need to be quantified. |
format | Online Article Text |
id | pubmed-3237062 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Medknow Publications & Media Pvt Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-32370622011-12-23 Standardization of whole slide image morphologic assessment with definition of a new application: Digital slide dynamic morphometry Puppa, Giacomo Risio, Mauro Sheahan, Kieran Vieth, Michael Zlobec, Inti Lugli, Alessandro Pecori, Sara Wang, Lai Mun Langner, Cord Mitomi, Hiroyuki Nakamura, Takatoshi Watanabe, Masahiko Ueno, Hideki Chasle, Jacques Senore, Carlo Conley, Stephen A. Herlin, Paulette Lauwers, Gregory Y. J Pathol Inform Technical Note BACKGROUND: In histopathology, the quantitative assessment of various morphologic features is based on methods originally conceived on specific areas observed through the microscope used. Failure to reproduce the same reference field of view using a different microscope will change the score assessed. Visualization of a digital slide on a screen through a dedicated viewer allows selection of the magnification. However, the field of view is rectangular, unlike the circular field of optical microscopy. In addition, the size of the selected area is not evident, and must be calculated. MATERIALS AND METHODS: A digital slide morphometric system was conceived to reproduce the various methods published for assessing tumor budding in colorectal cancer. Eighteen international experts in colorectal cancer were invited to participate in a web-based study by assessing tumor budding with five different methods in 100 digital slides. RESULTS: The specific areas to be tested by each method were marked by colored circles. The areas were grouped in a target-like pattern and then saved as an .xml file. When a digital slide was opened, the .xml file was imported in order to perform the measurements. Since the morphometric tool is composed of layers that can be freely moved on top of the digital slide, the technique was named digital slide dynamic morphometry. Twelve investigators completed the task, the majority of them performing the multiple evaluations of each of the cases in less than 12 minutes. CONCLUSIONS: Digital slide dynamic morphometry has various potential applications and might be a useful tool for the assessment of histologic parameters originally conceived for optical microscopy that need to be quantified. Medknow Publications & Media Pvt Ltd 2011-10-29 /pmc/articles/PMC3237062/ /pubmed/22200031 http://dx.doi.org/10.4103/2153-3539.86830 Text en Copyright: © 2011 Puppa G. http://creativecommons.org/licenses/by-nc-sa/3.0 This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Technical Note Puppa, Giacomo Risio, Mauro Sheahan, Kieran Vieth, Michael Zlobec, Inti Lugli, Alessandro Pecori, Sara Wang, Lai Mun Langner, Cord Mitomi, Hiroyuki Nakamura, Takatoshi Watanabe, Masahiko Ueno, Hideki Chasle, Jacques Senore, Carlo Conley, Stephen A. Herlin, Paulette Lauwers, Gregory Y. Standardization of whole slide image morphologic assessment with definition of a new application: Digital slide dynamic morphometry |
title | Standardization of whole slide image morphologic assessment with definition of a new application: Digital slide dynamic morphometry |
title_full | Standardization of whole slide image morphologic assessment with definition of a new application: Digital slide dynamic morphometry |
title_fullStr | Standardization of whole slide image morphologic assessment with definition of a new application: Digital slide dynamic morphometry |
title_full_unstemmed | Standardization of whole slide image morphologic assessment with definition of a new application: Digital slide dynamic morphometry |
title_short | Standardization of whole slide image morphologic assessment with definition of a new application: Digital slide dynamic morphometry |
title_sort | standardization of whole slide image morphologic assessment with definition of a new application: digital slide dynamic morphometry |
topic | Technical Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3237062/ https://www.ncbi.nlm.nih.gov/pubmed/22200031 http://dx.doi.org/10.4103/2153-3539.86830 |
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