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GenSensor Suite: A Web-Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation

The GenSensor Suite consists of four web tools for elucidating relationships among genes and proteins. GenPath results show which biochemical, regulatory, or other gene set categories are over- or under-represented in an input list compared to a background list. All common gene sets are available fo...

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Detalles Bibliográficos
Autores principales: Gosink, Mark, Khuri, Sawsan, Valdes, Camilo, Jiang, Zhijie, Tsinoremas, Nicholas F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3238354/
https://www.ncbi.nlm.nih.gov/pubmed/22194743
http://dx.doi.org/10.1155/2011/271563
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author Gosink, Mark
Khuri, Sawsan
Valdes, Camilo
Jiang, Zhijie
Tsinoremas, Nicholas F.
author_facet Gosink, Mark
Khuri, Sawsan
Valdes, Camilo
Jiang, Zhijie
Tsinoremas, Nicholas F.
author_sort Gosink, Mark
collection PubMed
description The GenSensor Suite consists of four web tools for elucidating relationships among genes and proteins. GenPath results show which biochemical, regulatory, or other gene set categories are over- or under-represented in an input list compared to a background list. All common gene sets are available for searching in GenPath, plus some specialized sets. Users can add custom background lists. GenInteract builds an interaction gene list from a single gene input and then analyzes this in GenPath. GenPubMed uses a PubMed query to identify a list of PubMed IDs, from which a gene list is extracted and queried in GenPath. GenViewer allows the user to query one gene set against another in GenPath. GenPath results are presented with relevant P- and q-values in an uncluttered, fully linked, and integrated table. Users can easily copy this table and paste it directly into a spreadsheet or document.
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spelling pubmed-32383542011-12-22 GenSensor Suite: A Web-Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation Gosink, Mark Khuri, Sawsan Valdes, Camilo Jiang, Zhijie Tsinoremas, Nicholas F. Adv Bioinformatics Research Article The GenSensor Suite consists of four web tools for elucidating relationships among genes and proteins. GenPath results show which biochemical, regulatory, or other gene set categories are over- or under-represented in an input list compared to a background list. All common gene sets are available for searching in GenPath, plus some specialized sets. Users can add custom background lists. GenInteract builds an interaction gene list from a single gene input and then analyzes this in GenPath. GenPubMed uses a PubMed query to identify a list of PubMed IDs, from which a gene list is extracted and queried in GenPath. GenViewer allows the user to query one gene set against another in GenPath. GenPath results are presented with relevant P- and q-values in an uncluttered, fully linked, and integrated table. Users can easily copy this table and paste it directly into a spreadsheet or document. Hindawi Publishing Corporation 2011 2011-12-13 /pmc/articles/PMC3238354/ /pubmed/22194743 http://dx.doi.org/10.1155/2011/271563 Text en Copyright © 2011 Mark Gosink et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Gosink, Mark
Khuri, Sawsan
Valdes, Camilo
Jiang, Zhijie
Tsinoremas, Nicholas F.
GenSensor Suite: A Web-Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation
title GenSensor Suite: A Web-Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation
title_full GenSensor Suite: A Web-Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation
title_fullStr GenSensor Suite: A Web-Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation
title_full_unstemmed GenSensor Suite: A Web-Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation
title_short GenSensor Suite: A Web-Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation
title_sort gensensor suite: a web-based tool for the analysis of gene and protein interactions, pathways, and regulation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3238354/
https://www.ncbi.nlm.nih.gov/pubmed/22194743
http://dx.doi.org/10.1155/2011/271563
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