Cargando…

A Functional Phylogenomic View of the Seed Plants

A novel result of the current research is the development and implementation of a unique functional phylogenomic approach that explores the genomic origins of seed plant diversification. We first use 22,833 sets of orthologs from the nuclear genomes of 101 genera across land plants to reconstruct th...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lee, Ernest K., Cibrian-Jaramillo, Angelica, Kolokotronis, Sergios-Orestis, Katari, Manpreet S., Stamatakis, Alexandros, Ott, Michael, Chiu, Joanna C., Little, Damon P., Stevenson, Dennis Wm., McCombie, W. Richard, Martienssen, Robert A., Coruzzi, Gloria, DeSalle, Rob
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2011
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3240601/ https://www.ncbi.nlm.nih.gov/pubmed/22194700 http://dx.doi.org/10.1371/journal.pgen.1002411

Ejemplares similares

Using Phylogenomic Patterns and Gene Ontology to Identify Proteins of Importance in Plant Evolution
por: Cibrián-Jaramillo, Angélica, et al.
Publicado: (2010)

The Impact of Outgroup Choice and Missing Data on Major Seed Plant Phylogenetics Using Genome-Wide EST Data
por: de la Torre-Bárcena, Jose Eduardo, et al.
Publicado: (2009)

Clusterflock: a flocking algorithm for isolating congruent phylogenomic datasets
por: Narechania, Apurva, et al.
Publicado: (2016)

Random Addition Concatenation Analysis: A Novel Approach to the Exploration of Phylogenomic Signal Reveals Strong Agreement between Core and Shell Genomic Partitions in the Cyanobacteria
por: Narechania, Apurva, et al.
Publicado: (2012)

Testing the Effectiveness of an International Conservation Agreement: Marketplace Forensics and CITES Caviar Trade Regulation
por: Doukakis, Phaedra, et al.
Publicado: (2012)

ESTimating plant phylogeny: lessons from partitioning
por: de la Torre, Jose EB, et al.
Publicado: (2006)

The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants
por: Li, Ying, et al.
Publicado: (2015)

Concatenated Analysis Sheds Light on Early Metazoan Evolution and Fuels a Modern “Urmetazoon” Hypothesis
por: Schierwater, Bernd, et al.
Publicado: (2009)

The genome of the Wollemi pine, a critically endangered “living fossil” unchanged since the Cretaceous, reveals extensive ancient transposon activity
por: Stevenson, Dennis Wm., et al.
Publicado: (2023)

Expressed sequence tag analysis in Cycas, the most primitive living seed plant
por: Brenner, Eric D, et al.
Publicado: (2003)

Mycobacterial Phylogenomics: An Enhanced Method for Gene Turnover Analysis Reveals Uneven Levels of Gene Gain and Loss among Species and Gene Families
por: Librado, Pablo, et al.
Publicado: (2014)

Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
por: Vidal, Elena A, et al.
Publicado: (2013)

Insect Phylogenomics: Exploring the Source of Incongruence Using New Transcriptomic Data
por: Simon, Sabrina, et al.
Publicado: (2012)

Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius
por: Rosenfeld, Jeffrey A., et al.
Publicado: (2016)

Increasing Metagenomic Resolution of Microbiome Interactions Through Functional Phylogenomics and Bacterial Sub-Communities
por: Cibrián-Jaramillo, Angélica, et al.
Publicado: (2016)

1232. Phylogenomics of Enterococcus faecium From South America: Revisiting Worldwide VRE Population Structure
por: Rios, Rafael, et al.
Publicado: (2018)

Intron Evolution: Testing Hypotheses of Intron Evolution Using the Phylogenomics of Tetraspanins
por: Garcia-España, Antonio, et al.
Publicado: (2009)

Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
por: Sarkar, Indra Neil, et al.
Publicado: (2008)

EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes
por: Brenner, Eric D, et al.
Publicado: (2005)

Historical Mammal Extinction on Christmas Island (Indian Ocean) Correlates with Introduced Infectious Disease
por: Wyatt, Kelly B., et al.
Publicado: (2008)

Correction: Historical Mammal Extinction on Christmas Island (Indian Ocean) Correlates with Introduced Infectious Disease
por: Wyatt, Kelly B., et al.
Publicado: (2009)

The Real maccoyii: Identifying Tuna Sushi with DNA Barcodes – Contrasting Characteristic Attributes and Genetic Distances
por: Lowenstein, Jacob H., et al.
Publicado: (2009)

Phylogenomic Diversity Elucidates Mechanistic Insights into Lyme Borreliae-Host Association
por: Combs, Matthew, et al.
Publicado: (2022)

Detection of mitochondrial insertions in the nucleus (NuMts) of Pleistocene and modern muskoxen
por: Kolokotronis, Sergios-Orestis, et al.
Publicado: (2007)

Phylogenomics of Salvia L. subgenus Calosphace (Lamiaceae)
por: Lara-Cabrera, Sabina Irene, et al.
Publicado: (2021)

In Silico Evaluation of Predicted Regulatory Interactions in Arabidopsis thaliana
por: Nero, Damion, et al.
Publicado: (2009)

Selecting optimal partitioning schemes for phylogenomic datasets
por: Lanfear, Robert, et al.
Publicado: (2014)

Fine-scale genetic analysis of the exploited Nile monitor (Varanus niloticus) in Sahelian Africa
por: Dowell, Stephanie A, et al.
Publicado: (2015)

To beat or not to beat a tick: comparison of DNA extraction methods for ticks (Ixodes scapularis)
por: Ammazzalorso, Alyssa D., et al.
Publicado: (2015)

No Observed Effect of Landscape Fragmentation on Pathogen Infection Prevalence in Blacklegged Ticks (Ixodes scapularis) in the Northeastern United States
por: Zolnik, Christine P., et al.
Publicado: (2015)

Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data
por: Stamatakis, Alexandros, et al.
Publicado: (2010)

Population genetics of the understory fishtail palm Chamaedorea ernesti-augusti in Belize: high genetic connectivity with local differentiation
por: Cibrián-Jaramillo, Angélica, et al.
Publicado: (2009)

Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis
por: Obertello, Mariana, et al.
Publicado: (2010)

Molecular Tooth Decay
por: DeSalle, Rob
Publicado: (2009)

A natural history of color: the science behind what we see and how we see it
por: DeSalle, Rob
Publicado: (2020)

ExaML version 3: a tool for phylogenomic analyses on supercomputers
por: Kozlov, Alexey M., et al.
Publicado: (2015)

An Outbreak of Anthrax
por: McCombie,
Publicado: (1915)

Combining genetic and distributional approaches to sourcing introduced species: a case study on the Nile monitor (Varanus niloticus) in Florida
por: Dowell, Stephanie A., et al.
Publicado: (2016)

Morphological Characters Can Strongly Influence Early Animal Relationships Inferred from Phylogenomic Data Sets
por: Neumann, Johannes S, et al.
Publicado: (2020)

DNA barcodes reveal species-specific mercury levels in tuna sushi that pose a health risk to consumers
por: Lowenstein, Jacob H., et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_5ng1d8a9tjbosg7slponoq4do5