Cargando…
The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments
The DNA Data Bank of Japan (DDBJ; http://www.ddbj.nig.ac.jp) maintains and provides archival, retrieval and analytical resources for biological information. The central DDBJ resource consists of public, open-access nucleotide sequence databases including raw sequence reads, assembly information and...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244990/ https://www.ncbi.nlm.nih.gov/pubmed/22110025 http://dx.doi.org/10.1093/nar/gkr994 |
_version_ | 1782219773982015488 |
---|---|
author | Kodama, Yuichi Mashima, Jun Kaminuma, Eli Gojobori, Takashi Ogasawara, Osamu Takagi, Toshihisa Okubo, Kousaku Nakamura, Yasukazu |
author_facet | Kodama, Yuichi Mashima, Jun Kaminuma, Eli Gojobori, Takashi Ogasawara, Osamu Takagi, Toshihisa Okubo, Kousaku Nakamura, Yasukazu |
author_sort | Kodama, Yuichi |
collection | PubMed |
description | The DNA Data Bank of Japan (DDBJ; http://www.ddbj.nig.ac.jp) maintains and provides archival, retrieval and analytical resources for biological information. The central DDBJ resource consists of public, open-access nucleotide sequence databases including raw sequence reads, assembly information and functional annotation. Database content is exchanged with EBI and NCBI within the framework of the International Nucleotide Sequence Database Collaboration (INSDC). In 2011, DDBJ launched two new resources: the ‘DDBJ Omics Archive’ (DOR; http://trace.ddbj.nig.ac.jp/dor) and BioProject (http://trace.ddbj.nig.ac.jp/bioproject). DOR is an archival database of functional genomics data generated by microarray and highly parallel new generation sequencers. Data are exchanged between the ArrayExpress at EBI and DOR in the common MAGE-TAB format. BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. In this article, we describe major changes and improvements introduced to the DDBJ services, and the launch of two new resources: DOR and BioProject. |
format | Online Article Text |
id | pubmed-3244990 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-32449902012-01-10 The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments Kodama, Yuichi Mashima, Jun Kaminuma, Eli Gojobori, Takashi Ogasawara, Osamu Takagi, Toshihisa Okubo, Kousaku Nakamura, Yasukazu Nucleic Acids Res Articles The DNA Data Bank of Japan (DDBJ; http://www.ddbj.nig.ac.jp) maintains and provides archival, retrieval and analytical resources for biological information. The central DDBJ resource consists of public, open-access nucleotide sequence databases including raw sequence reads, assembly information and functional annotation. Database content is exchanged with EBI and NCBI within the framework of the International Nucleotide Sequence Database Collaboration (INSDC). In 2011, DDBJ launched two new resources: the ‘DDBJ Omics Archive’ (DOR; http://trace.ddbj.nig.ac.jp/dor) and BioProject (http://trace.ddbj.nig.ac.jp/bioproject). DOR is an archival database of functional genomics data generated by microarray and highly parallel new generation sequencers. Data are exchanged between the ArrayExpress at EBI and DOR in the common MAGE-TAB format. BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. In this article, we describe major changes and improvements introduced to the DDBJ services, and the launch of two new resources: DOR and BioProject. Oxford University Press 2012-01 2011-11-22 /pmc/articles/PMC3244990/ /pubmed/22110025 http://dx.doi.org/10.1093/nar/gkr994 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Kodama, Yuichi Mashima, Jun Kaminuma, Eli Gojobori, Takashi Ogasawara, Osamu Takagi, Toshihisa Okubo, Kousaku Nakamura, Yasukazu The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments |
title | The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments |
title_full | The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments |
title_fullStr | The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments |
title_full_unstemmed | The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments |
title_short | The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments |
title_sort | dna data bank of japan launches a new resource, the ddbj omics archive of functional genomics experiments |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244990/ https://www.ncbi.nlm.nih.gov/pubmed/22110025 http://dx.doi.org/10.1093/nar/gkr994 |
work_keys_str_mv | AT kodamayuichi thednadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT mashimajun thednadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT kaminumaeli thednadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT gojoboritakashi thednadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT ogasawaraosamu thednadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT takagitoshihisa thednadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT okubokousaku thednadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT nakamurayasukazu thednadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT kodamayuichi dnadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT mashimajun dnadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT kaminumaeli dnadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT gojoboritakashi dnadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT ogasawaraosamu dnadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT takagitoshihisa dnadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT okubokousaku dnadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments AT nakamurayasukazu dnadatabankofjapanlaunchesanewresourcetheddbjomicsarchiveoffunctionalgenomicsexperiments |