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The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments

The DNA Data Bank of Japan (DDBJ; http://www.ddbj.nig.ac.jp) maintains and provides archival, retrieval and analytical resources for biological information. The central DDBJ resource consists of public, open-access nucleotide sequence databases including raw sequence reads, assembly information and...

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Autores principales: Kodama, Yuichi, Mashima, Jun, Kaminuma, Eli, Gojobori, Takashi, Ogasawara, Osamu, Takagi, Toshihisa, Okubo, Kousaku, Nakamura, Yasukazu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244990/
https://www.ncbi.nlm.nih.gov/pubmed/22110025
http://dx.doi.org/10.1093/nar/gkr994
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author Kodama, Yuichi
Mashima, Jun
Kaminuma, Eli
Gojobori, Takashi
Ogasawara, Osamu
Takagi, Toshihisa
Okubo, Kousaku
Nakamura, Yasukazu
author_facet Kodama, Yuichi
Mashima, Jun
Kaminuma, Eli
Gojobori, Takashi
Ogasawara, Osamu
Takagi, Toshihisa
Okubo, Kousaku
Nakamura, Yasukazu
author_sort Kodama, Yuichi
collection PubMed
description The DNA Data Bank of Japan (DDBJ; http://www.ddbj.nig.ac.jp) maintains and provides archival, retrieval and analytical resources for biological information. The central DDBJ resource consists of public, open-access nucleotide sequence databases including raw sequence reads, assembly information and functional annotation. Database content is exchanged with EBI and NCBI within the framework of the International Nucleotide Sequence Database Collaboration (INSDC). In 2011, DDBJ launched two new resources: the ‘DDBJ Omics Archive’ (DOR; http://trace.ddbj.nig.ac.jp/dor) and BioProject (http://trace.ddbj.nig.ac.jp/bioproject). DOR is an archival database of functional genomics data generated by microarray and highly parallel new generation sequencers. Data are exchanged between the ArrayExpress at EBI and DOR in the common MAGE-TAB format. BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. In this article, we describe major changes and improvements introduced to the DDBJ services, and the launch of two new resources: DOR and BioProject.
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spelling pubmed-32449902012-01-10 The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments Kodama, Yuichi Mashima, Jun Kaminuma, Eli Gojobori, Takashi Ogasawara, Osamu Takagi, Toshihisa Okubo, Kousaku Nakamura, Yasukazu Nucleic Acids Res Articles The DNA Data Bank of Japan (DDBJ; http://www.ddbj.nig.ac.jp) maintains and provides archival, retrieval and analytical resources for biological information. The central DDBJ resource consists of public, open-access nucleotide sequence databases including raw sequence reads, assembly information and functional annotation. Database content is exchanged with EBI and NCBI within the framework of the International Nucleotide Sequence Database Collaboration (INSDC). In 2011, DDBJ launched two new resources: the ‘DDBJ Omics Archive’ (DOR; http://trace.ddbj.nig.ac.jp/dor) and BioProject (http://trace.ddbj.nig.ac.jp/bioproject). DOR is an archival database of functional genomics data generated by microarray and highly parallel new generation sequencers. Data are exchanged between the ArrayExpress at EBI and DOR in the common MAGE-TAB format. BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. In this article, we describe major changes and improvements introduced to the DDBJ services, and the launch of two new resources: DOR and BioProject. Oxford University Press 2012-01 2011-11-22 /pmc/articles/PMC3244990/ /pubmed/22110025 http://dx.doi.org/10.1093/nar/gkr994 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Kodama, Yuichi
Mashima, Jun
Kaminuma, Eli
Gojobori, Takashi
Ogasawara, Osamu
Takagi, Toshihisa
Okubo, Kousaku
Nakamura, Yasukazu
The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments
title The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments
title_full The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments
title_fullStr The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments
title_full_unstemmed The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments
title_short The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments
title_sort dna data bank of japan launches a new resource, the ddbj omics archive of functional genomics experiments
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3244990/
https://www.ncbi.nlm.nih.gov/pubmed/22110025
http://dx.doi.org/10.1093/nar/gkr994
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