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Crystallography Open Database (COD): an open-access collection of crystal structures and platform for world-wide collaboration

Using an open-access distribution model, the Crystallography Open Database (COD, http://www.crystallography.net) collects all known ‘small molecule / small to medium sized unit cell’ crystal structures and makes them available freely on the Internet. As of today, the COD has aggregated ∼150 000 stru...

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Autores principales: Gražulis, Saulius, Daškevič, Adriana, Merkys, Andrius, Chateigner, Daniel, Lutterotti, Luca, Quirós, Miguel, Serebryanaya, Nadezhda R., Moeck, Peter, Downs, Robert T., Le Bail, Armel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245043/
https://www.ncbi.nlm.nih.gov/pubmed/22070882
http://dx.doi.org/10.1093/nar/gkr900
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author Gražulis, Saulius
Daškevič, Adriana
Merkys, Andrius
Chateigner, Daniel
Lutterotti, Luca
Quirós, Miguel
Serebryanaya, Nadezhda R.
Moeck, Peter
Downs, Robert T.
Le Bail, Armel
author_facet Gražulis, Saulius
Daškevič, Adriana
Merkys, Andrius
Chateigner, Daniel
Lutterotti, Luca
Quirós, Miguel
Serebryanaya, Nadezhda R.
Moeck, Peter
Downs, Robert T.
Le Bail, Armel
author_sort Gražulis, Saulius
collection PubMed
description Using an open-access distribution model, the Crystallography Open Database (COD, http://www.crystallography.net) collects all known ‘small molecule / small to medium sized unit cell’ crystal structures and makes them available freely on the Internet. As of today, the COD has aggregated ∼150 000 structures, offering basic search capabilities and the possibility to download the whole database, or parts thereof using a variety of standard open communication protocols. A newly developed website provides capabilities for all registered users to deposit published and so far unpublished structures as personal communications or pre-publication depositions. Such a setup enables extension of the COD database by many users simultaneously. This increases the possibilities for growth of the COD database, and is the first step towards establishing a world wide Internet-based collaborative platform dedicated to the collection and curation of structural knowledge.
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spelling pubmed-32450432012-01-10 Crystallography Open Database (COD): an open-access collection of crystal structures and platform for world-wide collaboration Gražulis, Saulius Daškevič, Adriana Merkys, Andrius Chateigner, Daniel Lutterotti, Luca Quirós, Miguel Serebryanaya, Nadezhda R. Moeck, Peter Downs, Robert T. Le Bail, Armel Nucleic Acids Res Articles Using an open-access distribution model, the Crystallography Open Database (COD, http://www.crystallography.net) collects all known ‘small molecule / small to medium sized unit cell’ crystal structures and makes them available freely on the Internet. As of today, the COD has aggregated ∼150 000 structures, offering basic search capabilities and the possibility to download the whole database, or parts thereof using a variety of standard open communication protocols. A newly developed website provides capabilities for all registered users to deposit published and so far unpublished structures as personal communications or pre-publication depositions. Such a setup enables extension of the COD database by many users simultaneously. This increases the possibilities for growth of the COD database, and is the first step towards establishing a world wide Internet-based collaborative platform dedicated to the collection and curation of structural knowledge. Oxford University Press 2012-01 2011-11-08 /pmc/articles/PMC3245043/ /pubmed/22070882 http://dx.doi.org/10.1093/nar/gkr900 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Gražulis, Saulius
Daškevič, Adriana
Merkys, Andrius
Chateigner, Daniel
Lutterotti, Luca
Quirós, Miguel
Serebryanaya, Nadezhda R.
Moeck, Peter
Downs, Robert T.
Le Bail, Armel
Crystallography Open Database (COD): an open-access collection of crystal structures and platform for world-wide collaboration
title Crystallography Open Database (COD): an open-access collection of crystal structures and platform for world-wide collaboration
title_full Crystallography Open Database (COD): an open-access collection of crystal structures and platform for world-wide collaboration
title_fullStr Crystallography Open Database (COD): an open-access collection of crystal structures and platform for world-wide collaboration
title_full_unstemmed Crystallography Open Database (COD): an open-access collection of crystal structures and platform for world-wide collaboration
title_short Crystallography Open Database (COD): an open-access collection of crystal structures and platform for world-wide collaboration
title_sort crystallography open database (cod): an open-access collection of crystal structures and platform for world-wide collaboration
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245043/
https://www.ncbi.nlm.nih.gov/pubmed/22070882
http://dx.doi.org/10.1093/nar/gkr900
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