IMG/M: the integrated metagenome data management and comparative analysis system

The integrated microbial genomes and metagenomes (IMG/M) system provides support for comparative analysis of microbial community aggregate genomes (metagenomes) in a comprehensive integrated context. IMG/M integrates metagenome data sets with isolate microbial genomes from the IMG system. IMG/M'...

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Autores principales: Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Ratner, Anna, Jacob, Biju, Pati, Amrita, Huntemann, Marcel, Liolios, Konstantinos, Pagani, Ioanna, Anderson, Iain, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245048/
https://www.ncbi.nlm.nih.gov/pubmed/22086953
http://dx.doi.org/10.1093/nar/gkr975
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author Markowitz, Victor M.
Chen, I-Min A.
Chu, Ken
Szeto, Ernest
Palaniappan, Krishna
Grechkin, Yuri
Ratner, Anna
Jacob, Biju
Pati, Amrita
Huntemann, Marcel
Liolios, Konstantinos
Pagani, Ioanna
Anderson, Iain
Mavromatis, Konstantinos
Ivanova, Natalia N.
Kyrpides, Nikos C.
author_facet Markowitz, Victor M.
Chen, I-Min A.
Chu, Ken
Szeto, Ernest
Palaniappan, Krishna
Grechkin, Yuri
Ratner, Anna
Jacob, Biju
Pati, Amrita
Huntemann, Marcel
Liolios, Konstantinos
Pagani, Ioanna
Anderson, Iain
Mavromatis, Konstantinos
Ivanova, Natalia N.
Kyrpides, Nikos C.
author_sort Markowitz, Victor M.
collection PubMed
description The integrated microbial genomes and metagenomes (IMG/M) system provides support for comparative analysis of microbial community aggregate genomes (metagenomes) in a comprehensive integrated context. IMG/M integrates metagenome data sets with isolate microbial genomes from the IMG system. IMG/M's data content and analytical capabilities have been extended through regular updates since its first release in 2007. IMG/M is available at http://img.jgi.doe.gov/m. A companion IMG/M systems provide support for annotation and expert review of unpublished metagenomic data sets (IMG/M ER: http://img.jgi.doe.gov/mer).
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spelling pubmed-32450482012-01-10 IMG/M: the integrated metagenome data management and comparative analysis system Markowitz, Victor M. Chen, I-Min A. Chu, Ken Szeto, Ernest Palaniappan, Krishna Grechkin, Yuri Ratner, Anna Jacob, Biju Pati, Amrita Huntemann, Marcel Liolios, Konstantinos Pagani, Ioanna Anderson, Iain Mavromatis, Konstantinos Ivanova, Natalia N. Kyrpides, Nikos C. Nucleic Acids Res Articles The integrated microbial genomes and metagenomes (IMG/M) system provides support for comparative analysis of microbial community aggregate genomes (metagenomes) in a comprehensive integrated context. IMG/M integrates metagenome data sets with isolate microbial genomes from the IMG system. IMG/M's data content and analytical capabilities have been extended through regular updates since its first release in 2007. IMG/M is available at http://img.jgi.doe.gov/m. A companion IMG/M systems provide support for annotation and expert review of unpublished metagenomic data sets (IMG/M ER: http://img.jgi.doe.gov/mer). Oxford University Press 2012-01 2011-11-15 /pmc/articles/PMC3245048/ /pubmed/22086953 http://dx.doi.org/10.1093/nar/gkr975 Text en Published by Oxford University Press 2011. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Markowitz, Victor M.
Chen, I-Min A.
Chu, Ken
Szeto, Ernest
Palaniappan, Krishna
Grechkin, Yuri
Ratner, Anna
Jacob, Biju
Pati, Amrita
Huntemann, Marcel
Liolios, Konstantinos
Pagani, Ioanna
Anderson, Iain
Mavromatis, Konstantinos
Ivanova, Natalia N.
Kyrpides, Nikos C.
IMG/M: the integrated metagenome data management and comparative analysis system
title IMG/M: the integrated metagenome data management and comparative analysis system
title_full IMG/M: the integrated metagenome data management and comparative analysis system
title_fullStr IMG/M: the integrated metagenome data management and comparative analysis system
title_full_unstemmed IMG/M: the integrated metagenome data management and comparative analysis system
title_short IMG/M: the integrated metagenome data management and comparative analysis system
title_sort img/m: the integrated metagenome data management and comparative analysis system
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245048/
https://www.ncbi.nlm.nih.gov/pubmed/22086953
http://dx.doi.org/10.1093/nar/gkr975
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