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The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
The Genomes OnLine Database (GOLD, http://www.genomesonline.org/) is a comprehensive resource for centralized monitoring of genome and metagenome projects worldwide. Both complete and ongoing projects, along with their associated metadata, can be accessed in GOLD through precomputed tables and a sea...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245063/ https://www.ncbi.nlm.nih.gov/pubmed/22135293 http://dx.doi.org/10.1093/nar/gkr1100 |
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author | Pagani, Ioanna Liolios, Konstantinos Jansson, Jakob Chen, I-Min A. Smirnova, Tatyana Nosrat, Bahador Markowitz, Victor M. Kyrpides, Nikos C. |
author_facet | Pagani, Ioanna Liolios, Konstantinos Jansson, Jakob Chen, I-Min A. Smirnova, Tatyana Nosrat, Bahador Markowitz, Victor M. Kyrpides, Nikos C. |
author_sort | Pagani, Ioanna |
collection | PubMed |
description | The Genomes OnLine Database (GOLD, http://www.genomesonline.org/) is a comprehensive resource for centralized monitoring of genome and metagenome projects worldwide. Both complete and ongoing projects, along with their associated metadata, can be accessed in GOLD through precomputed tables and a search page. As of September 2011, GOLD, now on version 4.0, contains information for 11 472 sequencing projects, of which 2907 have been completed and their sequence data has been deposited in a public repository. Out of these complete projects, 1918 are finished and 989 are permanent drafts. Moreover, GOLD contains information for 340 metagenome studies associated with 1927 metagenome samples. GOLD continues to expand, moving toward the goal of providing the most comprehensive repository of metadata information related to the projects and their organisms/environments in accordance with the Minimum Information about any (x) Sequence specification and beyond. |
format | Online Article Text |
id | pubmed-3245063 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-32450632012-01-10 The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata Pagani, Ioanna Liolios, Konstantinos Jansson, Jakob Chen, I-Min A. Smirnova, Tatyana Nosrat, Bahador Markowitz, Victor M. Kyrpides, Nikos C. Nucleic Acids Res Articles The Genomes OnLine Database (GOLD, http://www.genomesonline.org/) is a comprehensive resource for centralized monitoring of genome and metagenome projects worldwide. Both complete and ongoing projects, along with their associated metadata, can be accessed in GOLD through precomputed tables and a search page. As of September 2011, GOLD, now on version 4.0, contains information for 11 472 sequencing projects, of which 2907 have been completed and their sequence data has been deposited in a public repository. Out of these complete projects, 1918 are finished and 989 are permanent drafts. Moreover, GOLD contains information for 340 metagenome studies associated with 1927 metagenome samples. GOLD continues to expand, moving toward the goal of providing the most comprehensive repository of metadata information related to the projects and their organisms/environments in accordance with the Minimum Information about any (x) Sequence specification and beyond. Oxford University Press 2012-01 2011-11-30 /pmc/articles/PMC3245063/ /pubmed/22135293 http://dx.doi.org/10.1093/nar/gkr1100 Text en Published by Oxford University Press 2011. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Pagani, Ioanna Liolios, Konstantinos Jansson, Jakob Chen, I-Min A. Smirnova, Tatyana Nosrat, Bahador Markowitz, Victor M. Kyrpides, Nikos C. The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata |
title | The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata |
title_full | The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata |
title_fullStr | The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata |
title_full_unstemmed | The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata |
title_short | The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata |
title_sort | genomes online database (gold) v.4: status of genomic and metagenomic projects and their associated metadata |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245063/ https://www.ncbi.nlm.nih.gov/pubmed/22135293 http://dx.doi.org/10.1093/nar/gkr1100 |
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