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The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

The Genomes OnLine Database (GOLD, http://www.genomesonline.org/) is a comprehensive resource for centralized monitoring of genome and metagenome projects worldwide. Both complete and ongoing projects, along with their associated metadata, can be accessed in GOLD through precomputed tables and a sea...

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Autores principales: Pagani, Ioanna, Liolios, Konstantinos, Jansson, Jakob, Chen, I-Min A., Smirnova, Tatyana, Nosrat, Bahador, Markowitz, Victor M., Kyrpides, Nikos C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245063/
https://www.ncbi.nlm.nih.gov/pubmed/22135293
http://dx.doi.org/10.1093/nar/gkr1100
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author Pagani, Ioanna
Liolios, Konstantinos
Jansson, Jakob
Chen, I-Min A.
Smirnova, Tatyana
Nosrat, Bahador
Markowitz, Victor M.
Kyrpides, Nikos C.
author_facet Pagani, Ioanna
Liolios, Konstantinos
Jansson, Jakob
Chen, I-Min A.
Smirnova, Tatyana
Nosrat, Bahador
Markowitz, Victor M.
Kyrpides, Nikos C.
author_sort Pagani, Ioanna
collection PubMed
description The Genomes OnLine Database (GOLD, http://www.genomesonline.org/) is a comprehensive resource for centralized monitoring of genome and metagenome projects worldwide. Both complete and ongoing projects, along with their associated metadata, can be accessed in GOLD through precomputed tables and a search page. As of September 2011, GOLD, now on version 4.0, contains information for 11 472 sequencing projects, of which 2907 have been completed and their sequence data has been deposited in a public repository. Out of these complete projects, 1918 are finished and 989 are permanent drafts. Moreover, GOLD contains information for 340 metagenome studies associated with 1927 metagenome samples. GOLD continues to expand, moving toward the goal of providing the most comprehensive repository of metadata information related to the projects and their organisms/environments in accordance with the Minimum Information about any (x) Sequence specification and beyond.
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spelling pubmed-32450632012-01-10 The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata Pagani, Ioanna Liolios, Konstantinos Jansson, Jakob Chen, I-Min A. Smirnova, Tatyana Nosrat, Bahador Markowitz, Victor M. Kyrpides, Nikos C. Nucleic Acids Res Articles The Genomes OnLine Database (GOLD, http://www.genomesonline.org/) is a comprehensive resource for centralized monitoring of genome and metagenome projects worldwide. Both complete and ongoing projects, along with their associated metadata, can be accessed in GOLD through precomputed tables and a search page. As of September 2011, GOLD, now on version 4.0, contains information for 11 472 sequencing projects, of which 2907 have been completed and their sequence data has been deposited in a public repository. Out of these complete projects, 1918 are finished and 989 are permanent drafts. Moreover, GOLD contains information for 340 metagenome studies associated with 1927 metagenome samples. GOLD continues to expand, moving toward the goal of providing the most comprehensive repository of metadata information related to the projects and their organisms/environments in accordance with the Minimum Information about any (x) Sequence specification and beyond. Oxford University Press 2012-01 2011-11-30 /pmc/articles/PMC3245063/ /pubmed/22135293 http://dx.doi.org/10.1093/nar/gkr1100 Text en Published by Oxford University Press 2011. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Pagani, Ioanna
Liolios, Konstantinos
Jansson, Jakob
Chen, I-Min A.
Smirnova, Tatyana
Nosrat, Bahador
Markowitz, Victor M.
Kyrpides, Nikos C.
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
title The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
title_full The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
title_fullStr The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
title_full_unstemmed The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
title_short The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata
title_sort genomes online database (gold) v.4: status of genomic and metagenomic projects and their associated metadata
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245063/
https://www.ncbi.nlm.nih.gov/pubmed/22135293
http://dx.doi.org/10.1093/nar/gkr1100
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