Cargando…

ProOpDB: Prokaryotic Operon DataBase

The Prokaryotic Operon DataBase (ProOpDB, http://operons.ibt.unam.mx/OperonPredictor) constitutes one of the most precise and complete repositories of operon predictions now available. Using our novel and highly accurate operon identification algorithm, we have predicted the operon structures of mor...

Descripción completa

Detalles Bibliográficos
Autores principales:	Taboada, Blanca, Ciria, Ricardo, Martinez-Guerrero, Cristian E., Merino, Enrique
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2012
Materias:	Articles
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245079/ https://www.ncbi.nlm.nih.gov/pubmed/22096236 http://dx.doi.org/10.1093/nar/gkr1020

Ejemplares similares

Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes
por: Taboada, Blanca, et al.
Publicado: (2018)

AcrDB: a database of anti-CRISPR operons in prokaryotes and viruses
por: Huang, Le, et al.
Publicado: (2020)

High accuracy operon prediction method based on STRING database scores
por: Taboada, Blanca, et al.
Publicado: (2010)

DOOR: a database for prokaryotic operons
por: Mao, Fenglou, et al.
Publicado: (2009)

OperonDB: a comprehensive database of predicted operons in microbial genomes
por: Pertea, Mihaela, et al.
Publicado: (2009)

Detecting uber-operons in prokaryotic genomes
por: Che, Dongsheng, et al.
Publicado: (2006)

MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria
por: Ranjan, Sarita, et al.
Publicado: (2006)

Transcriptome dynamics-based operon prediction in prokaryotes
por: Fortino, Vittorio, et al.
Publicado: (2014)

Position preference of essential genes in prokaryotic operons
por: Liu, Tao, et al.
Publicado: (2021)

dbPSP: a curated database for protein phosphorylation sites in prokaryotes
por: Pan, Zhicheng, et al.
Publicado: (2015)

OperomeDB: A Database of Condition-Specific Transcription Units in Prokaryotic Genomes
por: Chetal, Kashish, et al.
Publicado: (2015)

dbPSP 2.0, an updated database of protein phosphorylation sites in prokaryotes
por: Shi, Ying, et al.
Publicado: (2020)

The distinctive signatures of promoter regions and operon junctions across prokaryotes
por: Janga, Sarath Chandra, et al.
Publicado: (2006)

Footprints of Optimal Protein Assembly Strategies in the Operonic Structure of Prokaryotes
por: Ewald, Jan, et al.
Publicado: (2015)

DiProDB: a database for dinucleotide properties
por: Friedel, Maik, et al.
Publicado: (2009)

ProCarDB: a database of bacterial carotenoids
por: Nupur, L. N. U., et al.
Publicado: (2016)

MedProDB: A database of Mediator proteins
por: Bhardwaj, Rohan, et al.
Publicado: (2021)

A novel method for accurate operon predictions in all sequenced prokaryotes
por: Price, Morgan N., et al.
Publicado: (2005)

AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses
por: Yi, Haidong, et al.
Publicado: (2020)

QuartetS-DB: a large-scale orthology database for prokaryotes and eukaryotes inferred by evolutionary evidence
por: Yu, Chenggang, et al.
Publicado: (2012)

ProCarbDB: a database of carbohydrate-binding proteins
por: Copoiu, Liviu, et al.
Publicado: (2020)

proChIPdb: a chromatin immunoprecipitation database for prokaryotic organisms
por: Decker, Katherine T, et al.
Publicado: (2021)

ODB: a database of operons accumulating known operons across multiple genomes
por: Okuda, Shujiro, et al.
Publicado: (2006)

SoyProDB: A database for the identification of soybean seed proteins
por: Tavakolan, Mona, et al.
Publicado: (2013)

HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection
por: Puigbò, Pere, et al.
Publicado: (2008)

BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes
por: Rey, Julien, et al.
Publicado: (2014)

BactPepDB: a database of predicted peptides from a exhaustive survey of complete prokaryote genomes
por: Rey, Julien, et al.
Publicado: (2014)

ProPan: a comprehensive database for profiling prokaryotic pan-genome dynamics
por: Zhang, Yadong, et al.
Publicado: (2022)

OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments
por: Price, Morgan N, et al.
Publicado: (2006)

ProGenExpress: Visualization of quantitative data on prokaryotic genomes
por: Watson, Michael
Publicado: (2005)

Pro MongoDB development
por: Vohra, Deepak
Publicado: (2015)

Pro Hibernate and MongoDB
por: Leonard, Anghel
Publicado: (2013)

ProThermDB: thermodynamic database for proteins and mutants revisited after 15 years
por: Nikam, Rahul, et al.
Publicado: (2020)

Caught between Two Genes: Accounting for Operonic Gene Structure Improves Prokaryotic RNA Sequencing Quantification
por: Reiter, Taylor
Publicado: (2021)

NATsDB: Natural Antisense Transcripts DataBase
por: Zhang, Yong, et al.
Publicado: (2007)

ResiDB: An automated database manager for sequence data
por: Hendling, Michaela, et al.
Publicado: (2021)

customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search
por: Wang, Xiaojing, et al.
Publicado: (2013)

ODB: a database for operon organizations, 2011 update
por: Okuda, Shujiro, et al.
Publicado: (2011)

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions
por: Salgado, Heladia, et al.
Publicado: (2006)

ChromDB: The Chromatin Database
por: Gendler, Karla, et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_ke30pm5618v2oss84hv131utvg