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PomBase: a comprehensive online resource for fission yeast

PomBase (www.pombase.org) is a new model organism database established to provide access to comprehensive, accurate, and up-to-date molecular data and biological information for the fission yeast Schizosaccharomyces pombe to effectively support both exploratory and hypothesis-driven research. PomBas...

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Autores principales: Wood, Valerie, Harris, Midori A., McDowall, Mark D., Rutherford, Kim, Vaughan, Brendan W., Staines, Daniel M., Aslett, Martin, Lock, Antonia, Bähler, Jürg, Kersey, Paul J., Oliver, Stephen G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245111/
https://www.ncbi.nlm.nih.gov/pubmed/22039153
http://dx.doi.org/10.1093/nar/gkr853
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author Wood, Valerie
Harris, Midori A.
McDowall, Mark D.
Rutherford, Kim
Vaughan, Brendan W.
Staines, Daniel M.
Aslett, Martin
Lock, Antonia
Bähler, Jürg
Kersey, Paul J.
Oliver, Stephen G.
author_facet Wood, Valerie
Harris, Midori A.
McDowall, Mark D.
Rutherford, Kim
Vaughan, Brendan W.
Staines, Daniel M.
Aslett, Martin
Lock, Antonia
Bähler, Jürg
Kersey, Paul J.
Oliver, Stephen G.
author_sort Wood, Valerie
collection PubMed
description PomBase (www.pombase.org) is a new model organism database established to provide access to comprehensive, accurate, and up-to-date molecular data and biological information for the fission yeast Schizosaccharomyces pombe to effectively support both exploratory and hypothesis-driven research. PomBase encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets, and supports sophisticated user-defined queries. The implementation of PomBase integrates a Chado relational database that houses manually curated data with Ensembl software that supports sequence-based annotation and web access. PomBase will provide user-friendly tools to promote curation by experts within the fission yeast community. This will make a key contribution to shaping its content and ensuring its comprehensiveness and long-term relevance.
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spelling pubmed-32451112012-01-10 PomBase: a comprehensive online resource for fission yeast Wood, Valerie Harris, Midori A. McDowall, Mark D. Rutherford, Kim Vaughan, Brendan W. Staines, Daniel M. Aslett, Martin Lock, Antonia Bähler, Jürg Kersey, Paul J. Oliver, Stephen G. Nucleic Acids Res Articles PomBase (www.pombase.org) is a new model organism database established to provide access to comprehensive, accurate, and up-to-date molecular data and biological information for the fission yeast Schizosaccharomyces pombe to effectively support both exploratory and hypothesis-driven research. PomBase encompasses annotation of genomic sequence and features, comprehensive manual literature curation and genome-wide data sets, and supports sophisticated user-defined queries. The implementation of PomBase integrates a Chado relational database that houses manually curated data with Ensembl software that supports sequence-based annotation and web access. PomBase will provide user-friendly tools to promote curation by experts within the fission yeast community. This will make a key contribution to shaping its content and ensuring its comprehensiveness and long-term relevance. Oxford University Press 2012-01 2011-10-28 /pmc/articles/PMC3245111/ /pubmed/22039153 http://dx.doi.org/10.1093/nar/gkr853 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Wood, Valerie
Harris, Midori A.
McDowall, Mark D.
Rutherford, Kim
Vaughan, Brendan W.
Staines, Daniel M.
Aslett, Martin
Lock, Antonia
Bähler, Jürg
Kersey, Paul J.
Oliver, Stephen G.
PomBase: a comprehensive online resource for fission yeast
title PomBase: a comprehensive online resource for fission yeast
title_full PomBase: a comprehensive online resource for fission yeast
title_fullStr PomBase: a comprehensive online resource for fission yeast
title_full_unstemmed PomBase: a comprehensive online resource for fission yeast
title_short PomBase: a comprehensive online resource for fission yeast
title_sort pombase: a comprehensive online resource for fission yeast
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245111/
https://www.ncbi.nlm.nih.gov/pubmed/22039153
http://dx.doi.org/10.1093/nar/gkr853
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