The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

The Aspergillus Genome Database (AspGD; http://www.aspgd.org) is a freely available, web-based resource for researchers studying fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD curators have now completed comprehensive review of the...

Descripción completa

Detalles Bibliográficos
Autores principales: Arnaud, Martha B., Cerqueira, Gustavo C., Inglis, Diane O., Skrzypek, Marek S., Binkley, Jonathan, Chibucos, Marcus C., Crabtree, Jonathan, Howarth, Clinton, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin, Wortman, Jennifer R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245136/
https://www.ncbi.nlm.nih.gov/pubmed/22080559
http://dx.doi.org/10.1093/nar/gkr875
_version_ 1782219808342802432
author Arnaud, Martha B.
Cerqueira, Gustavo C.
Inglis, Diane O.
Skrzypek, Marek S.
Binkley, Jonathan
Chibucos, Marcus C.
Crabtree, Jonathan
Howarth, Clinton
Orvis, Joshua
Shah, Prachi
Wymore, Farrell
Binkley, Gail
Miyasato, Stuart R.
Simison, Matt
Sherlock, Gavin
Wortman, Jennifer R.
author_facet Arnaud, Martha B.
Cerqueira, Gustavo C.
Inglis, Diane O.
Skrzypek, Marek S.
Binkley, Jonathan
Chibucos, Marcus C.
Crabtree, Jonathan
Howarth, Clinton
Orvis, Joshua
Shah, Prachi
Wymore, Farrell
Binkley, Gail
Miyasato, Stuart R.
Simison, Matt
Sherlock, Gavin
Wortman, Jennifer R.
author_sort Arnaud, Martha B.
collection PubMed
description The Aspergillus Genome Database (AspGD; http://www.aspgd.org) is a freely available, web-based resource for researchers studying fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD curators have now completed comprehensive review of the entire published literature about Aspergillus nidulans and Aspergillus fumigatus, and this annotation is provided with streamlined, ortholog-based navigation of the multispecies information. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. AspGD also provides resources to foster interaction and dissemination of community information and resources. We welcome and encourage feedback at aspergillus-curator@lists.stanford.edu.
format Online
Article
Text
id pubmed-3245136
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-32451362012-01-10 The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources Arnaud, Martha B. Cerqueira, Gustavo C. Inglis, Diane O. Skrzypek, Marek S. Binkley, Jonathan Chibucos, Marcus C. Crabtree, Jonathan Howarth, Clinton Orvis, Joshua Shah, Prachi Wymore, Farrell Binkley, Gail Miyasato, Stuart R. Simison, Matt Sherlock, Gavin Wortman, Jennifer R. Nucleic Acids Res Articles The Aspergillus Genome Database (AspGD; http://www.aspgd.org) is a freely available, web-based resource for researchers studying fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD curators have now completed comprehensive review of the entire published literature about Aspergillus nidulans and Aspergillus fumigatus, and this annotation is provided with streamlined, ortholog-based navigation of the multispecies information. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. AspGD also provides resources to foster interaction and dissemination of community information and resources. We welcome and encourage feedback at aspergillus-curator@lists.stanford.edu. Oxford University Press 2012-01 2011-11-12 /pmc/articles/PMC3245136/ /pubmed/22080559 http://dx.doi.org/10.1093/nar/gkr875 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Arnaud, Martha B.
Cerqueira, Gustavo C.
Inglis, Diane O.
Skrzypek, Marek S.
Binkley, Jonathan
Chibucos, Marcus C.
Crabtree, Jonathan
Howarth, Clinton
Orvis, Joshua
Shah, Prachi
Wymore, Farrell
Binkley, Gail
Miyasato, Stuart R.
Simison, Matt
Sherlock, Gavin
Wortman, Jennifer R.
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources
title The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources
title_full The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources
title_fullStr The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources
title_full_unstemmed The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources
title_short The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources
title_sort aspergillus genome database (aspgd): recent developments in comprehensive multispecies curation, comparative genomics and community resources
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245136/
https://www.ncbi.nlm.nih.gov/pubmed/22080559
http://dx.doi.org/10.1093/nar/gkr875
work_keys_str_mv AT arnaudmarthab theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT cerqueiragustavoc theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT inglisdianeo theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT skrzypekmareks theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT binkleyjonathan theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT chibucosmarcusc theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT crabtreejonathan theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT howarthclinton theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT orvisjoshua theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT shahprachi theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT wymorefarrell theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT binkleygail theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT miyasatostuartr theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT simisonmatt theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT sherlockgavin theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT wortmanjenniferr theaspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT arnaudmarthab aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT cerqueiragustavoc aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT inglisdianeo aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT skrzypekmareks aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT binkleyjonathan aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT chibucosmarcusc aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT crabtreejonathan aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT howarthclinton aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT orvisjoshua aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT shahprachi aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT wymorefarrell aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT binkleygail aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT miyasatostuartr aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT simisonmatt aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT sherlockgavin aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources
AT wortmanjenniferr aspergillusgenomedatabaseaspgdrecentdevelopmentsincomprehensivemultispeciescurationcomparativegenomicsandcommunityresources

Ejemplares similares