Cargando…
Xanthusbase after five years expands to become Openmods
Xanthusbase (http://www.xanthusbase.org), a model organism database for the bacterium Myxococcus xanthus, functions as a collaborative information repository based on Wikipedia principles. It was created more than 5 years ago to serve as a cost-effective reference database for M. xanthus researchers...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245146/ https://www.ncbi.nlm.nih.gov/pubmed/22116063 http://dx.doi.org/10.1093/nar/gkr1054 |
_version_ | 1782219810616115200 |
---|---|
author | Pratt-Szeliga, Philip C. Skewes, Aaron D. Yan, Jinyuan Welch, Laura G. Welch, Roy D. |
author_facet | Pratt-Szeliga, Philip C. Skewes, Aaron D. Yan, Jinyuan Welch, Laura G. Welch, Roy D. |
author_sort | Pratt-Szeliga, Philip C. |
collection | PubMed |
description | Xanthusbase (http://www.xanthusbase.org), a model organism database for the bacterium Myxococcus xanthus, functions as a collaborative information repository based on Wikipedia principles. It was created more than 5 years ago to serve as a cost-effective reference database for M. xanthus researchers, an education tool for undergraduate students to learn about genome annotation, and a means for the community of researchers to collaboratively improve their organism’s annotation. We have achieved several goals and are seeking creative solutions to ongoing challenges. Along the way we have made several important improvements to Xanthusbase related to stability, security and usability. Most importantly, we have designed and implemented an installer that enables other microbial model organism communities to use it as a MOD. This version, called Openmods, has already been used to create Xenorhabdusbase (http://xenorhabdusbase.bact.wisc.edu), Caulobacterbase (http://caulobacterbase.bsd.uchicago.edu) and soon Bdellovibriobase. |
format | Online Article Text |
id | pubmed-3245146 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-32451462012-01-10 Xanthusbase after five years expands to become Openmods Pratt-Szeliga, Philip C. Skewes, Aaron D. Yan, Jinyuan Welch, Laura G. Welch, Roy D. Nucleic Acids Res Articles Xanthusbase (http://www.xanthusbase.org), a model organism database for the bacterium Myxococcus xanthus, functions as a collaborative information repository based on Wikipedia principles. It was created more than 5 years ago to serve as a cost-effective reference database for M. xanthus researchers, an education tool for undergraduate students to learn about genome annotation, and a means for the community of researchers to collaboratively improve their organism’s annotation. We have achieved several goals and are seeking creative solutions to ongoing challenges. Along the way we have made several important improvements to Xanthusbase related to stability, security and usability. Most importantly, we have designed and implemented an installer that enables other microbial model organism communities to use it as a MOD. This version, called Openmods, has already been used to create Xenorhabdusbase (http://xenorhabdusbase.bact.wisc.edu), Caulobacterbase (http://caulobacterbase.bsd.uchicago.edu) and soon Bdellovibriobase. Oxford University Press 2012-01 2011-11-23 /pmc/articles/PMC3245146/ /pubmed/22116063 http://dx.doi.org/10.1093/nar/gkr1054 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Pratt-Szeliga, Philip C. Skewes, Aaron D. Yan, Jinyuan Welch, Laura G. Welch, Roy D. Xanthusbase after five years expands to become Openmods |
title | Xanthusbase after five years expands to become Openmods |
title_full | Xanthusbase after five years expands to become Openmods |
title_fullStr | Xanthusbase after five years expands to become Openmods |
title_full_unstemmed | Xanthusbase after five years expands to become Openmods |
title_short | Xanthusbase after five years expands to become Openmods |
title_sort | xanthusbase after five years expands to become openmods |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245146/ https://www.ncbi.nlm.nih.gov/pubmed/22116063 http://dx.doi.org/10.1093/nar/gkr1054 |
work_keys_str_mv | AT prattszeligaphilipc xanthusbaseafterfiveyearsexpandstobecomeopenmods AT skewesaarond xanthusbaseafterfiveyearsexpandstobecomeopenmods AT yanjinyuan xanthusbaseafterfiveyearsexpandstobecomeopenmods AT welchlaurag xanthusbaseafterfiveyearsexpandstobecomeopenmods AT welchroyd xanthusbaseafterfiveyearsexpandstobecomeopenmods |