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The significance of nitrogen cost minimization in proteomes of marine microorganisms

Marine microorganisms thrive under low levels of nitrogen (N). N cost minimization is a major selective pressure imprinted on open-ocean microorganism genomes. Here we show that amino-acid sequences from the open ocean are reduced in N, but increased in average mass compared with coastal-ocean micro...

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Detalles Bibliográficos
Autores principales: Grzymski, Joseph J, Dussaq, Alex M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3246230/
https://www.ncbi.nlm.nih.gov/pubmed/21697958
http://dx.doi.org/10.1038/ismej.2011.72
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author Grzymski, Joseph J
Dussaq, Alex M
author_facet Grzymski, Joseph J
Dussaq, Alex M
author_sort Grzymski, Joseph J
collection PubMed
description Marine microorganisms thrive under low levels of nitrogen (N). N cost minimization is a major selective pressure imprinted on open-ocean microorganism genomes. Here we show that amino-acid sequences from the open ocean are reduced in N, but increased in average mass compared with coastal-ocean microorganisms. Nutrient limitation exerts significant pressure on organisms supporting the trade-off between N cost minimization and increased average mass of amino acids that is a function of increased A+T codon usage. N cost minimization, especially of highly expressed proteins, reduces the total cellular N budget by 2.7–10% this minimization in combination with reduction in genome size and cell size is an evolutionary adaptation to nutrient limitation. The biogeochemical and evolutionary precedent for these findings suggests that N limitation is a stronger selective force in the ocean than biosynthetic costs and is an important evolutionary strategy in resource-limited ecosystems.
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spelling pubmed-32462302012-01-04 The significance of nitrogen cost minimization in proteomes of marine microorganisms Grzymski, Joseph J Dussaq, Alex M ISME J Original Article Marine microorganisms thrive under low levels of nitrogen (N). N cost minimization is a major selective pressure imprinted on open-ocean microorganism genomes. Here we show that amino-acid sequences from the open ocean are reduced in N, but increased in average mass compared with coastal-ocean microorganisms. Nutrient limitation exerts significant pressure on organisms supporting the trade-off between N cost minimization and increased average mass of amino acids that is a function of increased A+T codon usage. N cost minimization, especially of highly expressed proteins, reduces the total cellular N budget by 2.7–10% this minimization in combination with reduction in genome size and cell size is an evolutionary adaptation to nutrient limitation. The biogeochemical and evolutionary precedent for these findings suggests that N limitation is a stronger selective force in the ocean than biosynthetic costs and is an important evolutionary strategy in resource-limited ecosystems. Nature Publishing Group 2012-01 2011-06-23 /pmc/articles/PMC3246230/ /pubmed/21697958 http://dx.doi.org/10.1038/ismej.2011.72 Text en Copyright © 2012 International Society for Microbial Ecology http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under the Creative Commons Attribution-NonCommercial-No Derivative Works 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/
spellingShingle Original Article
Grzymski, Joseph J
Dussaq, Alex M
The significance of nitrogen cost minimization in proteomes of marine microorganisms
title The significance of nitrogen cost minimization in proteomes of marine microorganisms
title_full The significance of nitrogen cost minimization in proteomes of marine microorganisms
title_fullStr The significance of nitrogen cost minimization in proteomes of marine microorganisms
title_full_unstemmed The significance of nitrogen cost minimization in proteomes of marine microorganisms
title_short The significance of nitrogen cost minimization in proteomes of marine microorganisms
title_sort significance of nitrogen cost minimization in proteomes of marine microorganisms
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3246230/
https://www.ncbi.nlm.nih.gov/pubmed/21697958
http://dx.doi.org/10.1038/ismej.2011.72
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