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The significance of nitrogen cost minimization in proteomes of marine microorganisms
Marine microorganisms thrive under low levels of nitrogen (N). N cost minimization is a major selective pressure imprinted on open-ocean microorganism genomes. Here we show that amino-acid sequences from the open ocean are reduced in N, but increased in average mass compared with coastal-ocean micro...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3246230/ https://www.ncbi.nlm.nih.gov/pubmed/21697958 http://dx.doi.org/10.1038/ismej.2011.72 |
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author | Grzymski, Joseph J Dussaq, Alex M |
author_facet | Grzymski, Joseph J Dussaq, Alex M |
author_sort | Grzymski, Joseph J |
collection | PubMed |
description | Marine microorganisms thrive under low levels of nitrogen (N). N cost minimization is a major selective pressure imprinted on open-ocean microorganism genomes. Here we show that amino-acid sequences from the open ocean are reduced in N, but increased in average mass compared with coastal-ocean microorganisms. Nutrient limitation exerts significant pressure on organisms supporting the trade-off between N cost minimization and increased average mass of amino acids that is a function of increased A+T codon usage. N cost minimization, especially of highly expressed proteins, reduces the total cellular N budget by 2.7–10% this minimization in combination with reduction in genome size and cell size is an evolutionary adaptation to nutrient limitation. The biogeochemical and evolutionary precedent for these findings suggests that N limitation is a stronger selective force in the ocean than biosynthetic costs and is an important evolutionary strategy in resource-limited ecosystems. |
format | Online Article Text |
id | pubmed-3246230 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-32462302012-01-04 The significance of nitrogen cost minimization in proteomes of marine microorganisms Grzymski, Joseph J Dussaq, Alex M ISME J Original Article Marine microorganisms thrive under low levels of nitrogen (N). N cost minimization is a major selective pressure imprinted on open-ocean microorganism genomes. Here we show that amino-acid sequences from the open ocean are reduced in N, but increased in average mass compared with coastal-ocean microorganisms. Nutrient limitation exerts significant pressure on organisms supporting the trade-off between N cost minimization and increased average mass of amino acids that is a function of increased A+T codon usage. N cost minimization, especially of highly expressed proteins, reduces the total cellular N budget by 2.7–10% this minimization in combination with reduction in genome size and cell size is an evolutionary adaptation to nutrient limitation. The biogeochemical and evolutionary precedent for these findings suggests that N limitation is a stronger selective force in the ocean than biosynthetic costs and is an important evolutionary strategy in resource-limited ecosystems. Nature Publishing Group 2012-01 2011-06-23 /pmc/articles/PMC3246230/ /pubmed/21697958 http://dx.doi.org/10.1038/ismej.2011.72 Text en Copyright © 2012 International Society for Microbial Ecology http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under the Creative Commons Attribution-NonCommercial-No Derivative Works 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ |
spellingShingle | Original Article Grzymski, Joseph J Dussaq, Alex M The significance of nitrogen cost minimization in proteomes of marine microorganisms |
title | The significance of nitrogen cost minimization in proteomes of marine microorganisms |
title_full | The significance of nitrogen cost minimization in proteomes of marine microorganisms |
title_fullStr | The significance of nitrogen cost minimization in proteomes of marine microorganisms |
title_full_unstemmed | The significance of nitrogen cost minimization in proteomes of marine microorganisms |
title_short | The significance of nitrogen cost minimization in proteomes of marine microorganisms |
title_sort | significance of nitrogen cost minimization in proteomes of marine microorganisms |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3246230/ https://www.ncbi.nlm.nih.gov/pubmed/21697958 http://dx.doi.org/10.1038/ismej.2011.72 |
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