Cargando…

CATCHprofiles: Clustering and Alignment Tool for ChIP Profiles

Chromatin Immuno Precipitation (ChIP) profiling detects in vivo protein-DNA binding, and has revealed a large combinatorial complexity in the binding of chromatin associated proteins and their post-translational modifications. To fully explore the spatial and combinatorial patterns in ChIP-profiling...

Descripción completa

Detalles Bibliográficos
Autores principales:	Nielsen, Fiona G. G., Markus, Kasper Galschiøt, Friborg, Rune Møllegaard, Favrholdt, Lene Monrad, Stunnenberg, Hendrik G., Huynen, Martijn
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3251562/ https://www.ncbi.nlm.nih.gov/pubmed/22238575 http://dx.doi.org/10.1371/journal.pone.0028272

Ejemplares similares

The PinkThing for analysing ChIP profiling data in their genomic context
por: Nielsen, Fiona G, et al.
Publicado: (2013)

Optimising oligonucleotide array design for ChIP-on-chip
por: Nielsen, Fiona, et al.
Publicado: (2007)

ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data
por: Wu, George, et al.
Publicado: (2013)

A ChIP on the shoulder? Chromatin immunoprecipitation and validation strategies for ChIP antibodies
por: Wardle, Fiona C., et al.
Publicado: (2015)

ChIP-Chip Designs to Interrogate the Genome of Xenopus Embryos for Transcription Factor Binding and Epigenetic Regulation
por: Akkers, Robert C., et al.
Publicado: (2010)

Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data
por: Carroll, Thomas S., et al.
Publicado: (2014)

ChIP-AP: an integrated analysis pipeline for unbiased ChIP-seq analysis
por: Suryatenggara, Jeremiah, et al.
Publicado: (2021)

MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq data
por: Chen, Yiwen, et al.
Publicado: (2011)

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data
por: Zhu, Lihua J, et al.
Publicado: (2010)

An integrated system CisGenome for analyzing ChIP-chip and ChIP-seq data
por: Ji, Hongkai, et al.
Publicado: (2008)

ChIP-chip versus ChIP-seq: Lessons for experimental design and data analysis
por: Ho, Joshua WK, et al.
Publicado: (2011)

ChIP-Enrich: gene set enrichment testing for ChIP-seq data
por: Welch, Ryan P., et al.
Publicado: (2014)

W-ChIPeaks: a comprehensive web application tool for processing ChIP-chip and ChIP-seq data
por: Lan, Xun, et al.
Publicado: (2011)

Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data
por: Barozzi, Iros, et al.
Publicado: (2011)

Impact of genome assembly status on ChIP-Seq and ChIP-PET data mapping
por: Buisine, Nicolas, et al.
Publicado: (2009)

Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET
por: Mathur, Divya, et al.
Publicado: (2008)

Parallel factor ChIP provides essential internal control for quantitative differential ChIP-seq
por: Guertin, Michael J, et al.
Publicado: (2018)

Epigenomic profiling of archived FFPE tissues by enhanced PAT-ChIP (EPAT-ChIP) technology
por: Amatori, Stefano, et al.
Publicado: (2018)

ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking
por: Wu, George, et al.
Publicado: (2013)

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk
por: Brinkman, Arie B., et al.
Publicado: (2012)

Simplified ChIP-exo assays
por: Rossi, Matthew J., et al.
Publicado: (2018)

Use of ChIP-Seq data for the design of a multiple promoter-alignment method
por: Erb, Ionas, et al.
Publicado: (2012)

Genomic feature extraction and comparison based on global alignment of ChIP-sequencing data
por: Tang, Binhua
Publicado: (2016)

Analyzing ChIP-chip Data Using Bioconductor
por: Toedling, Joern, et al.
Publicado: (2008)

Normalization and experimental design for ChIP-chip data
por: Peng, Shouyong, et al.
Publicado: (2007)

ChIP on Chip: surprising results are often artifacts
por: Waldminghaus, Torsten, et al.
Publicado: (2010)

ChIP-PaM: an algorithm to identify protein-DNA interaction using ChIP-Seq data
por: Wu, Song, et al.
Publicado: (2010)

SNPs2ChIP: Latent Factors of ChIP-seq to infer functions of non-coding SNPs
por: Anand, Shankara, et al.
Publicado: (2019)

A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information
por: Ma, Xiaotu, et al.
Publicado: (2012)

A bioinformatic pipeline to analyze ChIP-exo datasets
por: Börlin, Christoph S, et al.
Publicado: (2019)

ChIP‐Atlas: a data‐mining suite powered by full integration of public ChIP‐seq data
por: Oki, Shinya, et al.
Publicado: (2018)

ChIPseqR: analysis of ChIP-seq experiments
por: Humburg, Peter, et al.
Publicado: (2011)

ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data
por: Buck, Michael J, et al.
Publicado: (2005)

An integrated ChIP-seq analysis platform with customizable workflows
por: Giannopoulou, Eugenia G, et al.
Publicado: (2011)

Evaluation of Algorithm Performance in ChIP-Seq Peak Detection
por: Wilbanks, Elizabeth G., et al.
Publicado: (2010)

CoCAS: a ChIP-on-chip analysis suite
por: Benoukraf, Touati, et al.
Publicado: (2009)

iTAR: a web server for identifying target genes of transcription factors using ChIP-seq or ChIP-chip data
por: Yang, Chia-Chun, et al.
Publicado: (2016)

jChIP: a graphical environment for exploratory ChIP-Seq data analysis
por: Chojnowski, Krzysztof, et al.
Publicado: (2014)

Modeling ChIP Sequencing In Silico with Applications
por: Zhang, Zhengdong D., et al.
Publicado: (2008)

Dual agarose magnetic (DAM) ChIP
por: Balakrishnan, Lata, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_fipab4f7eh8reh58btfnh3vj84