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A Greatly Under-Appreciated Fundamental Principle of Physical Organic Chemistry

If a species does not have a finite lifetime in the reaction medium, it cannot be a mechanistic intermediate. This principle was first enunciated by Jencks, as the concept of an enforced mechanism. For instance, neither primary nor secondary carbocations have long enough lifetimes to exist in an aqu...

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Autor principal: Cox, Robin A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Molecular Diversity Preservation International (MDPI) 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3257071/
https://www.ncbi.nlm.nih.gov/pubmed/22272074
http://dx.doi.org/10.3390/ijms12128316
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author Cox, Robin A.
author_facet Cox, Robin A.
author_sort Cox, Robin A.
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description If a species does not have a finite lifetime in the reaction medium, it cannot be a mechanistic intermediate. This principle was first enunciated by Jencks, as the concept of an enforced mechanism. For instance, neither primary nor secondary carbocations have long enough lifetimes to exist in an aqueous medium, so S(N)1 reactions involving these substrates are not possible, and an S(N)2 mechanism is enforced. Only tertiary carbocations and those stabilized by resonance (benzyl cations, acylium ions) are stable enough to be reaction intermediates. More importantly, it is now known that neither H(3)O(+) nor HO(−) exist as such in dilute aqueous solution. Several recent high-level calculations on large proton clusters are unable to localize the positive charge; it is found to be simply “on the cluster” as a whole. The lifetime of any ionized water species is exceedingly short, a few molecular vibrations at most; the best experimental study, using modern IR instrumentation, has the most probable hydrated proton structure as H(13)O(6)(+), but only an estimated quarter of the protons are present even in this form at any given instant. Thanks to the Grotthuss mechanism of chain transfer along hydrogen bonds, in reality a proton or a hydroxide ion is simply instantly available anywhere it is needed for reaction. Important mechanistic consequences result. Any charged oxygen species (e.g., a tetrahedral intermediate) is also not going to exist long enough to be a reaction intermediate, unless the charge is stabilized in some way, usually by resonance. General acid catalysis is the rule in reactions in concentrated aqueous acids. The Grotthuss mechanism also means that reactions involving neutral water are favored; the solvent is already highly structured, so the entropy involved in bringing several solvent molecules to the reaction center is unimportant. Examples are given.
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spelling pubmed-32570712012-01-23 A Greatly Under-Appreciated Fundamental Principle of Physical Organic Chemistry Cox, Robin A. Int J Mol Sci Review If a species does not have a finite lifetime in the reaction medium, it cannot be a mechanistic intermediate. This principle was first enunciated by Jencks, as the concept of an enforced mechanism. For instance, neither primary nor secondary carbocations have long enough lifetimes to exist in an aqueous medium, so S(N)1 reactions involving these substrates are not possible, and an S(N)2 mechanism is enforced. Only tertiary carbocations and those stabilized by resonance (benzyl cations, acylium ions) are stable enough to be reaction intermediates. More importantly, it is now known that neither H(3)O(+) nor HO(−) exist as such in dilute aqueous solution. Several recent high-level calculations on large proton clusters are unable to localize the positive charge; it is found to be simply “on the cluster” as a whole. The lifetime of any ionized water species is exceedingly short, a few molecular vibrations at most; the best experimental study, using modern IR instrumentation, has the most probable hydrated proton structure as H(13)O(6)(+), but only an estimated quarter of the protons are present even in this form at any given instant. Thanks to the Grotthuss mechanism of chain transfer along hydrogen bonds, in reality a proton or a hydroxide ion is simply instantly available anywhere it is needed for reaction. Important mechanistic consequences result. Any charged oxygen species (e.g., a tetrahedral intermediate) is also not going to exist long enough to be a reaction intermediate, unless the charge is stabilized in some way, usually by resonance. General acid catalysis is the rule in reactions in concentrated aqueous acids. The Grotthuss mechanism also means that reactions involving neutral water are favored; the solvent is already highly structured, so the entropy involved in bringing several solvent molecules to the reaction center is unimportant. Examples are given. Molecular Diversity Preservation International (MDPI) 2011-11-28 /pmc/articles/PMC3257071/ /pubmed/22272074 http://dx.doi.org/10.3390/ijms12128316 Text en © 2011 by the authors; licensee MDPI, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0 This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Review
Cox, Robin A.
A Greatly Under-Appreciated Fundamental Principle of Physical Organic Chemistry
title A Greatly Under-Appreciated Fundamental Principle of Physical Organic Chemistry
title_full A Greatly Under-Appreciated Fundamental Principle of Physical Organic Chemistry
title_fullStr A Greatly Under-Appreciated Fundamental Principle of Physical Organic Chemistry
title_full_unstemmed A Greatly Under-Appreciated Fundamental Principle of Physical Organic Chemistry
title_short A Greatly Under-Appreciated Fundamental Principle of Physical Organic Chemistry
title_sort greatly under-appreciated fundamental principle of physical organic chemistry
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3257071/
https://www.ncbi.nlm.nih.gov/pubmed/22272074
http://dx.doi.org/10.3390/ijms12128316
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