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Carbohydrate-active enzymes exemplify entropic principles in metabolism

Glycans comprise ubiquitous and essential biopolymers, which usually occur as highly diverse mixtures. The myriad different structures are generated by a limited number of carbohydrate-active enzymes (CAZymes), which are unusual in that they catalyze multiple reactions by being relatively unspecific...

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Autores principales: Kartal, Önder, Mahlow, Sebastian, Skupin, Alexander, Ebenhöh, Oliver
Formato: Online Artículo Texto
Lenguaje:English
Publicado: European Molecular Biology Organization 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261701/
https://www.ncbi.nlm.nih.gov/pubmed/22027553
http://dx.doi.org/10.1038/msb.2011.76
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author Kartal, Önder
Mahlow, Sebastian
Skupin, Alexander
Ebenhöh, Oliver
author_facet Kartal, Önder
Mahlow, Sebastian
Skupin, Alexander
Ebenhöh, Oliver
author_sort Kartal, Önder
collection PubMed
description Glycans comprise ubiquitous and essential biopolymers, which usually occur as highly diverse mixtures. The myriad different structures are generated by a limited number of carbohydrate-active enzymes (CAZymes), which are unusual in that they catalyze multiple reactions by being relatively unspecific with respect to substrate size. Existing experimental and theoretical descriptions of CAZyme-mediated reaction systems neither comprehensively explain observed action patterns nor suggest biological functions of polydisperse pools in metabolism. Here, we overcome these limitations with a novel theoretical description of this important class of biological systems in which the mixing entropy of polydisperse pools emerges as an important system variable. In vitro assays of three CAZymes essential for central carbon metabolism confirm the power of our approach to predict equilibrium distributions and non-equilibrium dynamics. A computational study of the turnover of the soluble heteroglycan pool exemplifies how entropy-driven reactions establish a metabolic buffer in vivo that attenuates fluctuations in carbohydrate availability. We argue that this interplay between energy- and entropy-driven processes represents an important regulatory design principle of metabolic systems.
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spelling pubmed-32617012012-01-20 Carbohydrate-active enzymes exemplify entropic principles in metabolism Kartal, Önder Mahlow, Sebastian Skupin, Alexander Ebenhöh, Oliver Mol Syst Biol Article Glycans comprise ubiquitous and essential biopolymers, which usually occur as highly diverse mixtures. The myriad different structures are generated by a limited number of carbohydrate-active enzymes (CAZymes), which are unusual in that they catalyze multiple reactions by being relatively unspecific with respect to substrate size. Existing experimental and theoretical descriptions of CAZyme-mediated reaction systems neither comprehensively explain observed action patterns nor suggest biological functions of polydisperse pools in metabolism. Here, we overcome these limitations with a novel theoretical description of this important class of biological systems in which the mixing entropy of polydisperse pools emerges as an important system variable. In vitro assays of three CAZymes essential for central carbon metabolism confirm the power of our approach to predict equilibrium distributions and non-equilibrium dynamics. A computational study of the turnover of the soluble heteroglycan pool exemplifies how entropy-driven reactions establish a metabolic buffer in vivo that attenuates fluctuations in carbohydrate availability. We argue that this interplay between energy- and entropy-driven processes represents an important regulatory design principle of metabolic systems. European Molecular Biology Organization 2011-10-25 /pmc/articles/PMC3261701/ /pubmed/22027553 http://dx.doi.org/10.1038/msb.2011.76 Text en Copyright © 2011, EMBO and Macmillan Publishers Limited https://creativecommons.org/licenses/by-nc-sa/3.0/This is an open-access article distributed under the terms of the Creative Commons Attribution Noncommercial Share Alike 3.0 Unported License, which allows readers to alter, transform, or build upon the article and then distribute the resulting work under the same or similar license to this one. The work must be attributed back to the original author and commercial use is not permitted without specific permission.
spellingShingle Article
Kartal, Önder
Mahlow, Sebastian
Skupin, Alexander
Ebenhöh, Oliver
Carbohydrate-active enzymes exemplify entropic principles in metabolism
title Carbohydrate-active enzymes exemplify entropic principles in metabolism
title_full Carbohydrate-active enzymes exemplify entropic principles in metabolism
title_fullStr Carbohydrate-active enzymes exemplify entropic principles in metabolism
title_full_unstemmed Carbohydrate-active enzymes exemplify entropic principles in metabolism
title_short Carbohydrate-active enzymes exemplify entropic principles in metabolism
title_sort carbohydrate-active enzymes exemplify entropic principles in metabolism
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261701/
https://www.ncbi.nlm.nih.gov/pubmed/22027553
http://dx.doi.org/10.1038/msb.2011.76
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