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BioMart Central Portal: an open database network for the biological community

BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. Anybody can contribute an independently maintained resource to the Central Po...

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Autores principales: Guberman, Jonathan M., Ai, J., Arnaiz, O., Baran, Joachim, Blake, Andrew, Baldock, Richard, Chelala, Claude, Croft, David, Cros, Anthony, Cutts, Rosalind J., Di Génova, A., Forbes, Simon, Fujisawa, T., Gadaleta, E., Goodstein, D. M., Gundem, Gunes, Haggarty, Bernard, Haider, Syed, Hall, Matthew, Harris, Todd, Haw, Robin, Hu, S., Hubbard, Simon, Hsu, Jack, Iyer, Vivek, Jones, Philip, Katayama, Toshiaki, Kinsella, R., Kong, Lei, Lawson, Daniel, Liang, Yong, Lopez-Bigas, Nuria, Luo, J., Lush, Michael, Mason, Jeremy, Moreews, Francois, Ndegwa, Nelson, Oakley, Darren, Perez-Llamas, Christian, Primig, Michael, Rivkin, Elena, Rosanoff, S., Shepherd, Rebecca, Simon, Reinhard, Skarnes, B., Smedley, Damian, Sperling, Linda, Spooner, William, Stevenson, Peter, Stone, Kevin, Teague, J., Wang, Jun, Wang, Jianxin, Whitty, Brett, Wong, D. T., Wong-Erasmus, Marie, Yao, L., Youens-Clark, Ken, Yung, Christina, Zhang, Junjun, Kasprzyk, Arek
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3263598/
https://www.ncbi.nlm.nih.gov/pubmed/21930507
http://dx.doi.org/10.1093/database/bar041
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author Guberman, Jonathan M.
Ai, J.
Arnaiz, O.
Baran, Joachim
Blake, Andrew
Baldock, Richard
Chelala, Claude
Croft, David
Cros, Anthony
Cutts, Rosalind J.
Di Génova, A.
Forbes, Simon
Fujisawa, T.
Gadaleta, E.
Goodstein, D. M.
Gundem, Gunes
Haggarty, Bernard
Haider, Syed
Hall, Matthew
Harris, Todd
Haw, Robin
Hu, S.
Hubbard, Simon
Hsu, Jack
Iyer, Vivek
Jones, Philip
Katayama, Toshiaki
Kinsella, R.
Kong, Lei
Lawson, Daniel
Liang, Yong
Lopez-Bigas, Nuria
Luo, J.
Lush, Michael
Mason, Jeremy
Moreews, Francois
Ndegwa, Nelson
Oakley, Darren
Perez-Llamas, Christian
Primig, Michael
Rivkin, Elena
Rosanoff, S.
Shepherd, Rebecca
Simon, Reinhard
Skarnes, B.
Smedley, Damian
Sperling, Linda
Spooner, William
Stevenson, Peter
Stone, Kevin
Teague, J.
Wang, Jun
Wang, Jianxin
Whitty, Brett
Wong, D. T.
Wong-Erasmus, Marie
Yao, L.
Youens-Clark, Ken
Yung, Christina
Zhang, Junjun
Kasprzyk, Arek
author_facet Guberman, Jonathan M.
Ai, J.
Arnaiz, O.
Baran, Joachim
Blake, Andrew
Baldock, Richard
Chelala, Claude
Croft, David
Cros, Anthony
Cutts, Rosalind J.
Di Génova, A.
Forbes, Simon
Fujisawa, T.
Gadaleta, E.
Goodstein, D. M.
Gundem, Gunes
Haggarty, Bernard
Haider, Syed
Hall, Matthew
Harris, Todd
Haw, Robin
Hu, S.
Hubbard, Simon
Hsu, Jack
Iyer, Vivek
Jones, Philip
Katayama, Toshiaki
Kinsella, R.
Kong, Lei
Lawson, Daniel
Liang, Yong
Lopez-Bigas, Nuria
Luo, J.
Lush, Michael
Mason, Jeremy
Moreews, Francois
Ndegwa, Nelson
Oakley, Darren
Perez-Llamas, Christian
Primig, Michael
Rivkin, Elena
Rosanoff, S.
Shepherd, Rebecca
Simon, Reinhard
Skarnes, B.
Smedley, Damian
Sperling, Linda
Spooner, William
Stevenson, Peter
Stone, Kevin
Teague, J.
Wang, Jun
Wang, Jianxin
Whitty, Brett
Wong, D. T.
Wong-Erasmus, Marie
Yao, L.
Youens-Clark, Ken
Yung, Christina
Zhang, Junjun
Kasprzyk, Arek
author_sort Guberman, Jonathan M.
collection PubMed
description BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. Anybody can contribute an independently maintained resource to the Central Portal, allowing it to be exposed to and shared with the research community, and linking it with the other resources in the portal. Users can take advantage of the common interface to quickly utilize different sources without learning a new system for each. The system also simplifies cross-database searches that might otherwise require several complicated steps. Several integrated tools streamline common tasks, such as converting between ID formats and retrieving sequences. The combination of a wide variety of databases, an easy-to-use interface, robust programmatic access and the array of tools make Central Portal a one-stop shop for biological data querying. Here, we describe the structure of Central Portal and show example queries to demonstrate its capabilities. Database URL: http://central.biomart.org.
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spelling pubmed-32635982012-01-23 BioMart Central Portal: an open database network for the biological community Guberman, Jonathan M. Ai, J. Arnaiz, O. Baran, Joachim Blake, Andrew Baldock, Richard Chelala, Claude Croft, David Cros, Anthony Cutts, Rosalind J. Di Génova, A. Forbes, Simon Fujisawa, T. Gadaleta, E. Goodstein, D. M. Gundem, Gunes Haggarty, Bernard Haider, Syed Hall, Matthew Harris, Todd Haw, Robin Hu, S. Hubbard, Simon Hsu, Jack Iyer, Vivek Jones, Philip Katayama, Toshiaki Kinsella, R. Kong, Lei Lawson, Daniel Liang, Yong Lopez-Bigas, Nuria Luo, J. Lush, Michael Mason, Jeremy Moreews, Francois Ndegwa, Nelson Oakley, Darren Perez-Llamas, Christian Primig, Michael Rivkin, Elena Rosanoff, S. Shepherd, Rebecca Simon, Reinhard Skarnes, B. Smedley, Damian Sperling, Linda Spooner, William Stevenson, Peter Stone, Kevin Teague, J. Wang, Jun Wang, Jianxin Whitty, Brett Wong, D. T. Wong-Erasmus, Marie Yao, L. Youens-Clark, Ken Yung, Christina Zhang, Junjun Kasprzyk, Arek Database (Oxford) Original Article BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. Anybody can contribute an independently maintained resource to the Central Portal, allowing it to be exposed to and shared with the research community, and linking it with the other resources in the portal. Users can take advantage of the common interface to quickly utilize different sources without learning a new system for each. The system also simplifies cross-database searches that might otherwise require several complicated steps. Several integrated tools streamline common tasks, such as converting between ID formats and retrieving sequences. The combination of a wide variety of databases, an easy-to-use interface, robust programmatic access and the array of tools make Central Portal a one-stop shop for biological data querying. Here, we describe the structure of Central Portal and show example queries to demonstrate its capabilities. Database URL: http://central.biomart.org. Oxford University Press 2011-09-16 /pmc/articles/PMC3263598/ /pubmed/21930507 http://dx.doi.org/10.1093/database/bar041 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Guberman, Jonathan M.
Ai, J.
Arnaiz, O.
Baran, Joachim
Blake, Andrew
Baldock, Richard
Chelala, Claude
Croft, David
Cros, Anthony
Cutts, Rosalind J.
Di Génova, A.
Forbes, Simon
Fujisawa, T.
Gadaleta, E.
Goodstein, D. M.
Gundem, Gunes
Haggarty, Bernard
Haider, Syed
Hall, Matthew
Harris, Todd
Haw, Robin
Hu, S.
Hubbard, Simon
Hsu, Jack
Iyer, Vivek
Jones, Philip
Katayama, Toshiaki
Kinsella, R.
Kong, Lei
Lawson, Daniel
Liang, Yong
Lopez-Bigas, Nuria
Luo, J.
Lush, Michael
Mason, Jeremy
Moreews, Francois
Ndegwa, Nelson
Oakley, Darren
Perez-Llamas, Christian
Primig, Michael
Rivkin, Elena
Rosanoff, S.
Shepherd, Rebecca
Simon, Reinhard
Skarnes, B.
Smedley, Damian
Sperling, Linda
Spooner, William
Stevenson, Peter
Stone, Kevin
Teague, J.
Wang, Jun
Wang, Jianxin
Whitty, Brett
Wong, D. T.
Wong-Erasmus, Marie
Yao, L.
Youens-Clark, Ken
Yung, Christina
Zhang, Junjun
Kasprzyk, Arek
BioMart Central Portal: an open database network for the biological community
title BioMart Central Portal: an open database network for the biological community
title_full BioMart Central Portal: an open database network for the biological community
title_fullStr BioMart Central Portal: an open database network for the biological community
title_full_unstemmed BioMart Central Portal: an open database network for the biological community
title_short BioMart Central Portal: an open database network for the biological community
title_sort biomart central portal: an open database network for the biological community
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3263598/
https://www.ncbi.nlm.nih.gov/pubmed/21930507
http://dx.doi.org/10.1093/database/bar041
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