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BioMart Central Portal: an open database network for the biological community
BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. Anybody can contribute an independently maintained resource to the Central Po...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3263598/ https://www.ncbi.nlm.nih.gov/pubmed/21930507 http://dx.doi.org/10.1093/database/bar041 |
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author | Guberman, Jonathan M. Ai, J. Arnaiz, O. Baran, Joachim Blake, Andrew Baldock, Richard Chelala, Claude Croft, David Cros, Anthony Cutts, Rosalind J. Di Génova, A. Forbes, Simon Fujisawa, T. Gadaleta, E. Goodstein, D. M. Gundem, Gunes Haggarty, Bernard Haider, Syed Hall, Matthew Harris, Todd Haw, Robin Hu, S. Hubbard, Simon Hsu, Jack Iyer, Vivek Jones, Philip Katayama, Toshiaki Kinsella, R. Kong, Lei Lawson, Daniel Liang, Yong Lopez-Bigas, Nuria Luo, J. Lush, Michael Mason, Jeremy Moreews, Francois Ndegwa, Nelson Oakley, Darren Perez-Llamas, Christian Primig, Michael Rivkin, Elena Rosanoff, S. Shepherd, Rebecca Simon, Reinhard Skarnes, B. Smedley, Damian Sperling, Linda Spooner, William Stevenson, Peter Stone, Kevin Teague, J. Wang, Jun Wang, Jianxin Whitty, Brett Wong, D. T. Wong-Erasmus, Marie Yao, L. Youens-Clark, Ken Yung, Christina Zhang, Junjun Kasprzyk, Arek |
author_facet | Guberman, Jonathan M. Ai, J. Arnaiz, O. Baran, Joachim Blake, Andrew Baldock, Richard Chelala, Claude Croft, David Cros, Anthony Cutts, Rosalind J. Di Génova, A. Forbes, Simon Fujisawa, T. Gadaleta, E. Goodstein, D. M. Gundem, Gunes Haggarty, Bernard Haider, Syed Hall, Matthew Harris, Todd Haw, Robin Hu, S. Hubbard, Simon Hsu, Jack Iyer, Vivek Jones, Philip Katayama, Toshiaki Kinsella, R. Kong, Lei Lawson, Daniel Liang, Yong Lopez-Bigas, Nuria Luo, J. Lush, Michael Mason, Jeremy Moreews, Francois Ndegwa, Nelson Oakley, Darren Perez-Llamas, Christian Primig, Michael Rivkin, Elena Rosanoff, S. Shepherd, Rebecca Simon, Reinhard Skarnes, B. Smedley, Damian Sperling, Linda Spooner, William Stevenson, Peter Stone, Kevin Teague, J. Wang, Jun Wang, Jianxin Whitty, Brett Wong, D. T. Wong-Erasmus, Marie Yao, L. Youens-Clark, Ken Yung, Christina Zhang, Junjun Kasprzyk, Arek |
author_sort | Guberman, Jonathan M. |
collection | PubMed |
description | BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. Anybody can contribute an independently maintained resource to the Central Portal, allowing it to be exposed to and shared with the research community, and linking it with the other resources in the portal. Users can take advantage of the common interface to quickly utilize different sources without learning a new system for each. The system also simplifies cross-database searches that might otherwise require several complicated steps. Several integrated tools streamline common tasks, such as converting between ID formats and retrieving sequences. The combination of a wide variety of databases, an easy-to-use interface, robust programmatic access and the array of tools make Central Portal a one-stop shop for biological data querying. Here, we describe the structure of Central Portal and show example queries to demonstrate its capabilities. Database URL: http://central.biomart.org. |
format | Online Article Text |
id | pubmed-3263598 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-32635982012-01-23 BioMart Central Portal: an open database network for the biological community Guberman, Jonathan M. Ai, J. Arnaiz, O. Baran, Joachim Blake, Andrew Baldock, Richard Chelala, Claude Croft, David Cros, Anthony Cutts, Rosalind J. Di Génova, A. Forbes, Simon Fujisawa, T. Gadaleta, E. Goodstein, D. M. Gundem, Gunes Haggarty, Bernard Haider, Syed Hall, Matthew Harris, Todd Haw, Robin Hu, S. Hubbard, Simon Hsu, Jack Iyer, Vivek Jones, Philip Katayama, Toshiaki Kinsella, R. Kong, Lei Lawson, Daniel Liang, Yong Lopez-Bigas, Nuria Luo, J. Lush, Michael Mason, Jeremy Moreews, Francois Ndegwa, Nelson Oakley, Darren Perez-Llamas, Christian Primig, Michael Rivkin, Elena Rosanoff, S. Shepherd, Rebecca Simon, Reinhard Skarnes, B. Smedley, Damian Sperling, Linda Spooner, William Stevenson, Peter Stone, Kevin Teague, J. Wang, Jun Wang, Jianxin Whitty, Brett Wong, D. T. Wong-Erasmus, Marie Yao, L. Youens-Clark, Ken Yung, Christina Zhang, Junjun Kasprzyk, Arek Database (Oxford) Original Article BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. Anybody can contribute an independently maintained resource to the Central Portal, allowing it to be exposed to and shared with the research community, and linking it with the other resources in the portal. Users can take advantage of the common interface to quickly utilize different sources without learning a new system for each. The system also simplifies cross-database searches that might otherwise require several complicated steps. Several integrated tools streamline common tasks, such as converting between ID formats and retrieving sequences. The combination of a wide variety of databases, an easy-to-use interface, robust programmatic access and the array of tools make Central Portal a one-stop shop for biological data querying. Here, we describe the structure of Central Portal and show example queries to demonstrate its capabilities. Database URL: http://central.biomart.org. Oxford University Press 2011-09-16 /pmc/articles/PMC3263598/ /pubmed/21930507 http://dx.doi.org/10.1093/database/bar041 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Guberman, Jonathan M. Ai, J. Arnaiz, O. Baran, Joachim Blake, Andrew Baldock, Richard Chelala, Claude Croft, David Cros, Anthony Cutts, Rosalind J. Di Génova, A. Forbes, Simon Fujisawa, T. Gadaleta, E. Goodstein, D. M. Gundem, Gunes Haggarty, Bernard Haider, Syed Hall, Matthew Harris, Todd Haw, Robin Hu, S. Hubbard, Simon Hsu, Jack Iyer, Vivek Jones, Philip Katayama, Toshiaki Kinsella, R. Kong, Lei Lawson, Daniel Liang, Yong Lopez-Bigas, Nuria Luo, J. Lush, Michael Mason, Jeremy Moreews, Francois Ndegwa, Nelson Oakley, Darren Perez-Llamas, Christian Primig, Michael Rivkin, Elena Rosanoff, S. Shepherd, Rebecca Simon, Reinhard Skarnes, B. Smedley, Damian Sperling, Linda Spooner, William Stevenson, Peter Stone, Kevin Teague, J. Wang, Jun Wang, Jianxin Whitty, Brett Wong, D. T. Wong-Erasmus, Marie Yao, L. Youens-Clark, Ken Yung, Christina Zhang, Junjun Kasprzyk, Arek BioMart Central Portal: an open database network for the biological community |
title | BioMart Central Portal: an open database network for the biological community |
title_full | BioMart Central Portal: an open database network for the biological community |
title_fullStr | BioMart Central Portal: an open database network for the biological community |
title_full_unstemmed | BioMart Central Portal: an open database network for the biological community |
title_short | BioMart Central Portal: an open database network for the biological community |
title_sort | biomart central portal: an open database network for the biological community |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3263598/ https://www.ncbi.nlm.nih.gov/pubmed/21930507 http://dx.doi.org/10.1093/database/bar041 |
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