Data mining using the Catalogue of Somatic Mutations in Cancer BioMart

Catalogue of Somatic Mutations in Cancer (COSMIC) (http://www.sanger.ac.uk/cosmic) is a publicly available resource providing information on somatic mutations implicated in human cancer. Release v51 (January 2011) includes data from just over 19 000 genes, 161 787 coding mutations and 5573 gene fusi...

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Detalles Bibliográficos
Autores principales: Shepherd, Rebecca, Forbes, Simon A., Beare, David, Bamford, S., Cole, Charlotte G., Ward, Sari, Bindal, Nidhi, Gunasekaran, Prasad, Jia, Mingming, Kok, Chai Yin, Leung, Kenric, Menzies, Andrew, Butler, Adam P., Teague, Jon W., Campbell, Peter J., Stratton, Michael R., Futreal, P. Andrew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Original Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3263736/
https://www.ncbi.nlm.nih.gov/pubmed/21609966
http://dx.doi.org/10.1093/database/bar018
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author Shepherd, Rebecca
Forbes, Simon A.
Beare, David
Bamford, S.
Cole, Charlotte G.
Ward, Sari
Bindal, Nidhi
Gunasekaran, Prasad
Jia, Mingming
Kok, Chai Yin
Leung, Kenric
Menzies, Andrew
Butler, Adam P.
Teague, Jon W.
Campbell, Peter J.
Stratton, Michael R.
Futreal, P. Andrew
author_facet Shepherd, Rebecca
Forbes, Simon A.
Beare, David
Bamford, S.
Cole, Charlotte G.
Ward, Sari
Bindal, Nidhi
Gunasekaran, Prasad
Jia, Mingming
Kok, Chai Yin
Leung, Kenric
Menzies, Andrew
Butler, Adam P.
Teague, Jon W.
Campbell, Peter J.
Stratton, Michael R.
Futreal, P. Andrew
author_sort Shepherd, Rebecca
collection PubMed
description Catalogue of Somatic Mutations in Cancer (COSMIC) (http://www.sanger.ac.uk/cosmic) is a publicly available resource providing information on somatic mutations implicated in human cancer. Release v51 (January 2011) includes data from just over 19 000 genes, 161 787 coding mutations and 5573 gene fusions, described in more than 577 000 tumour samples. COSMICMart (COSMIC BioMart) provides a flexible way to mine these data and combine somatic mutations with other biological relevant data sets. This article describes the data available in COSMIC along with examples of how to successfully mine and integrate data sets using COSMICMart. Database URL: http://www.sanger.ac.uk/genetics/CGP/cosmic/biomart/martview/
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spelling pubmed-32637362012-01-23 Data mining using the Catalogue of Somatic Mutations in Cancer BioMart Shepherd, Rebecca Forbes, Simon A. Beare, David Bamford, S. Cole, Charlotte G. Ward, Sari Bindal, Nidhi Gunasekaran, Prasad Jia, Mingming Kok, Chai Yin Leung, Kenric Menzies, Andrew Butler, Adam P. Teague, Jon W. Campbell, Peter J. Stratton, Michael R. Futreal, P. Andrew Database (Oxford) Original Article Catalogue of Somatic Mutations in Cancer (COSMIC) (http://www.sanger.ac.uk/cosmic) is a publicly available resource providing information on somatic mutations implicated in human cancer. Release v51 (January 2011) includes data from just over 19 000 genes, 161 787 coding mutations and 5573 gene fusions, described in more than 577 000 tumour samples. COSMICMart (COSMIC BioMart) provides a flexible way to mine these data and combine somatic mutations with other biological relevant data sets. This article describes the data available in COSMIC along with examples of how to successfully mine and integrate data sets using COSMICMart. Database URL: http://www.sanger.ac.uk/genetics/CGP/cosmic/biomart/martview/ Oxford University Press 2011-05-23 /pmc/articles/PMC3263736/ /pubmed/21609966 http://dx.doi.org/10.1093/database/bar018 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Shepherd, Rebecca
Forbes, Simon A.
Beare, David
Bamford, S.
Cole, Charlotte G.
Ward, Sari
Bindal, Nidhi
Gunasekaran, Prasad
Jia, Mingming
Kok, Chai Yin
Leung, Kenric
Menzies, Andrew
Butler, Adam P.
Teague, Jon W.
Campbell, Peter J.
Stratton, Michael R.
Futreal, P. Andrew
Data mining using the Catalogue of Somatic Mutations in Cancer BioMart
title Data mining using the Catalogue of Somatic Mutations in Cancer BioMart
title_full Data mining using the Catalogue of Somatic Mutations in Cancer BioMart
title_fullStr Data mining using the Catalogue of Somatic Mutations in Cancer BioMart
title_full_unstemmed Data mining using the Catalogue of Somatic Mutations in Cancer BioMart
title_short Data mining using the Catalogue of Somatic Mutations in Cancer BioMart
title_sort data mining using the catalogue of somatic mutations in cancer biomart
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3263736/
https://www.ncbi.nlm.nih.gov/pubmed/21609966
http://dx.doi.org/10.1093/database/bar018
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