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A Feedback Quenched Oscillator Produces Turing Patterning with One Diffuser

Efforts to engineer synthetic gene networks that spontaneously produce patterning in multicellular ensembles have focused on Turing's original model and the “activator-inhibitor” models of Meinhardt and Gierer. Systems based on this model are notoriously difficult to engineer. We present the fi...

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Autores principales: Hsia, Justin, Holtz, William J., Huang, Daniel C., Arcak, Murat, Maharbiz, Michel M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3266880/
https://www.ncbi.nlm.nih.gov/pubmed/22291582
http://dx.doi.org/10.1371/journal.pcbi.1002331
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author Hsia, Justin
Holtz, William J.
Huang, Daniel C.
Arcak, Murat
Maharbiz, Michel M.
author_facet Hsia, Justin
Holtz, William J.
Huang, Daniel C.
Arcak, Murat
Maharbiz, Michel M.
author_sort Hsia, Justin
collection PubMed
description Efforts to engineer synthetic gene networks that spontaneously produce patterning in multicellular ensembles have focused on Turing's original model and the “activator-inhibitor” models of Meinhardt and Gierer. Systems based on this model are notoriously difficult to engineer. We present the first demonstration that Turing pattern formation can arise in a new family of oscillator-driven gene network topologies, specifically when a second feedback loop is introduced which quenches oscillations and incorporates a diffusible molecule. We provide an analysis of the system that predicts the range of kinetic parameters over which patterning should emerge and demonstrate the system's viability using stochastic simulations of a field of cells using realistic parameters. The primary goal of this paper is to provide a circuit architecture which can be implemented with relative ease by practitioners and which could serve as a model system for pattern generation in synthetic multicellular systems. Given the wide range of oscillatory circuits in natural systems, our system supports the tantalizing possibility that Turing pattern formation in natural multicellular systems can arise from oscillator-driven mechanisms.
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spelling pubmed-32668802012-01-30 A Feedback Quenched Oscillator Produces Turing Patterning with One Diffuser Hsia, Justin Holtz, William J. Huang, Daniel C. Arcak, Murat Maharbiz, Michel M. PLoS Comput Biol Research Article Efforts to engineer synthetic gene networks that spontaneously produce patterning in multicellular ensembles have focused on Turing's original model and the “activator-inhibitor” models of Meinhardt and Gierer. Systems based on this model are notoriously difficult to engineer. We present the first demonstration that Turing pattern formation can arise in a new family of oscillator-driven gene network topologies, specifically when a second feedback loop is introduced which quenches oscillations and incorporates a diffusible molecule. We provide an analysis of the system that predicts the range of kinetic parameters over which patterning should emerge and demonstrate the system's viability using stochastic simulations of a field of cells using realistic parameters. The primary goal of this paper is to provide a circuit architecture which can be implemented with relative ease by practitioners and which could serve as a model system for pattern generation in synthetic multicellular systems. Given the wide range of oscillatory circuits in natural systems, our system supports the tantalizing possibility that Turing pattern formation in natural multicellular systems can arise from oscillator-driven mechanisms. Public Library of Science 2012-01-26 /pmc/articles/PMC3266880/ /pubmed/22291582 http://dx.doi.org/10.1371/journal.pcbi.1002331 Text en Hsia et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Hsia, Justin
Holtz, William J.
Huang, Daniel C.
Arcak, Murat
Maharbiz, Michel M.
A Feedback Quenched Oscillator Produces Turing Patterning with One Diffuser
title A Feedback Quenched Oscillator Produces Turing Patterning with One Diffuser
title_full A Feedback Quenched Oscillator Produces Turing Patterning with One Diffuser
title_fullStr A Feedback Quenched Oscillator Produces Turing Patterning with One Diffuser
title_full_unstemmed A Feedback Quenched Oscillator Produces Turing Patterning with One Diffuser
title_short A Feedback Quenched Oscillator Produces Turing Patterning with One Diffuser
title_sort feedback quenched oscillator produces turing patterning with one diffuser
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3266880/
https://www.ncbi.nlm.nih.gov/pubmed/22291582
http://dx.doi.org/10.1371/journal.pcbi.1002331
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