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CellML metadata standards, associated tools and repositories
The development of standards for encoding mathematical models is an important component of model building and model sharing among scientists interested in understanding multi-scale physiological processes. CellML provides such a standard, particularly for models based on biophysical mechanisms, and...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2009
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268215/ https://www.ncbi.nlm.nih.gov/pubmed/19380315 http://dx.doi.org/10.1098/rsta.2008.0310 |
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author | Beard, Daniel A. Britten, Randall Cooling, Mike T. Garny, Alan Halstead, Matt D.B. Hunter, Peter J. Lawson, James Lloyd, Catherine M. Marsh, Justin Miller, Andrew Nickerson, David P. Nielsen, Poul M.F. Nomura, Taishin Subramanium, Shankar Wimalaratne, Sarala M. Yu, Tommy |
author_facet | Beard, Daniel A. Britten, Randall Cooling, Mike T. Garny, Alan Halstead, Matt D.B. Hunter, Peter J. Lawson, James Lloyd, Catherine M. Marsh, Justin Miller, Andrew Nickerson, David P. Nielsen, Poul M.F. Nomura, Taishin Subramanium, Shankar Wimalaratne, Sarala M. Yu, Tommy |
author_sort | Beard, Daniel A. |
collection | PubMed |
description | The development of standards for encoding mathematical models is an important component of model building and model sharing among scientists interested in understanding multi-scale physiological processes. CellML provides such a standard, particularly for models based on biophysical mechanisms, and a substantial number of models are now available in the CellML Model Repository. However, there is an urgent need to extend the current CellML metadata standard to provide biological and biophysical annotation of the models in order to facilitate model sharing, automated model reduction and connection to biological databases. This paper gives a broad overview of a number of new developments on CellML metadata and provides links to further methodological details available from the CellML website. |
format | Online Article Text |
id | pubmed-3268215 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2009 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-32682152012-01-31 CellML metadata standards, associated tools and repositories Beard, Daniel A. Britten, Randall Cooling, Mike T. Garny, Alan Halstead, Matt D.B. Hunter, Peter J. Lawson, James Lloyd, Catherine M. Marsh, Justin Miller, Andrew Nickerson, David P. Nielsen, Poul M.F. Nomura, Taishin Subramanium, Shankar Wimalaratne, Sarala M. Yu, Tommy Philos Trans A Math Phys Eng Sci Articles The development of standards for encoding mathematical models is an important component of model building and model sharing among scientists interested in understanding multi-scale physiological processes. CellML provides such a standard, particularly for models based on biophysical mechanisms, and a substantial number of models are now available in the CellML Model Repository. However, there is an urgent need to extend the current CellML metadata standard to provide biological and biophysical annotation of the models in order to facilitate model sharing, automated model reduction and connection to biological databases. This paper gives a broad overview of a number of new developments on CellML metadata and provides links to further methodological details available from the CellML website. The Royal Society 2009-05-28 /pmc/articles/PMC3268215/ /pubmed/19380315 http://dx.doi.org/10.1098/rsta.2008.0310 Text en Copyright © 2009 The Royal Society http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Beard, Daniel A. Britten, Randall Cooling, Mike T. Garny, Alan Halstead, Matt D.B. Hunter, Peter J. Lawson, James Lloyd, Catherine M. Marsh, Justin Miller, Andrew Nickerson, David P. Nielsen, Poul M.F. Nomura, Taishin Subramanium, Shankar Wimalaratne, Sarala M. Yu, Tommy CellML metadata standards, associated tools and repositories |
title | CellML metadata standards, associated tools and repositories |
title_full | CellML metadata standards, associated tools and repositories |
title_fullStr | CellML metadata standards, associated tools and repositories |
title_full_unstemmed | CellML metadata standards, associated tools and repositories |
title_short | CellML metadata standards, associated tools and repositories |
title_sort | cellml metadata standards, associated tools and repositories |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268215/ https://www.ncbi.nlm.nih.gov/pubmed/19380315 http://dx.doi.org/10.1098/rsta.2008.0310 |
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