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Additional phase information from UV damage of selenomethionine labelled proteins

Currently, selenium is the most widely used phasing vehicle for experimental phasing, either by single anomalous scattering or multiple-wavelength anomalous dispersion (MAD) procedures. The use of the single isomorphous replacement anomalous scattering (SIRAS) phasing procedure with selenomethionine...

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Autores principales: de Sanctis, Daniele, Tucker, Paul A., Panjikar, Santosh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268692/
https://www.ncbi.nlm.nih.gov/pubmed/21525645
http://dx.doi.org/10.1107/S0909049511004092
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author de Sanctis, Daniele
Tucker, Paul A.
Panjikar, Santosh
author_facet de Sanctis, Daniele
Tucker, Paul A.
Panjikar, Santosh
author_sort de Sanctis, Daniele
collection PubMed
description Currently, selenium is the most widely used phasing vehicle for experimental phasing, either by single anomalous scattering or multiple-wavelength anomalous dispersion (MAD) procedures. The use of the single isomorphous replacement anomalous scattering (SIRAS) phasing procedure with selenomethionine containing proteins is not so commonly used, as it requires isomorphous native data. Here it is demonstrated that isomorphous differences can be measured from intensity changes measured from a selenium labelled protein crystal before and after UV exposure. These can be coupled with the anomalous signal from the dataset collected at the selenium absorption edge to obtain SIRAS phases in a UV-RIPAS phasing experiment. The phasing procedure for two selenomethionine proteins, the feruloyl esterase module of xylanase 10B from Clostridium thermocellum and the Mycobacterium tuberculosis chorismate synthase, have been investigated using datasets collected near the absorption edge of selenium before and after UV radiation. The utility of UV radiation in measuring radiation damage data for isomorphous differences is highlighted and it is shown that, after such measurements, the UV-RIPAS procedure yields comparable phase sets with those obtained from the conventional MAD procedure. The results presented are encouraging for the development of alternative phasing approaches for selenomethionine proteins in difficult cases.
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spelling pubmed-32686922012-01-31 Additional phase information from UV damage of selenomethionine labelled proteins de Sanctis, Daniele Tucker, Paul A. Panjikar, Santosh J Synchrotron Radiat Radiation Damage Currently, selenium is the most widely used phasing vehicle for experimental phasing, either by single anomalous scattering or multiple-wavelength anomalous dispersion (MAD) procedures. The use of the single isomorphous replacement anomalous scattering (SIRAS) phasing procedure with selenomethionine containing proteins is not so commonly used, as it requires isomorphous native data. Here it is demonstrated that isomorphous differences can be measured from intensity changes measured from a selenium labelled protein crystal before and after UV exposure. These can be coupled with the anomalous signal from the dataset collected at the selenium absorption edge to obtain SIRAS phases in a UV-RIPAS phasing experiment. The phasing procedure for two selenomethionine proteins, the feruloyl esterase module of xylanase 10B from Clostridium thermocellum and the Mycobacterium tuberculosis chorismate synthase, have been investigated using datasets collected near the absorption edge of selenium before and after UV radiation. The utility of UV radiation in measuring radiation damage data for isomorphous differences is highlighted and it is shown that, after such measurements, the UV-RIPAS procedure yields comparable phase sets with those obtained from the conventional MAD procedure. The results presented are encouraging for the development of alternative phasing approaches for selenomethionine proteins in difficult cases. International Union of Crystallography 2011-05-01 2011-03-11 /pmc/articles/PMC3268692/ /pubmed/21525645 http://dx.doi.org/10.1107/S0909049511004092 Text en © Daniele de Sanctis et al. 2011 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Radiation Damage
de Sanctis, Daniele
Tucker, Paul A.
Panjikar, Santosh
Additional phase information from UV damage of selenomethionine labelled proteins
title Additional phase information from UV damage of selenomethionine labelled proteins
title_full Additional phase information from UV damage of selenomethionine labelled proteins
title_fullStr Additional phase information from UV damage of selenomethionine labelled proteins
title_full_unstemmed Additional phase information from UV damage of selenomethionine labelled proteins
title_short Additional phase information from UV damage of selenomethionine labelled proteins
title_sort additional phase information from uv damage of selenomethionine labelled proteins
topic Radiation Damage
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268692/
https://www.ncbi.nlm.nih.gov/pubmed/21525645
http://dx.doi.org/10.1107/S0909049511004092
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