Cargando…

Short Co-occurring Polypeptide Regions Can Predict Global Protein Interaction Maps

A goal of the post-genomics era has been to elucidate a detailed global map of protein-protein interactions (PPIs) within a cell. Here, we show that the presence of co-occurring short polypeptide sequences between interacting protein partners appears to be conserved across different organisms. We pr...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pitre, Sylvain, Hooshyar, Mohsen, Schoenrock, Andrew, Samanfar, Bahram, Jessulat, Matthew, Green, James R., Dehne, Frank, Golshani, Ashkan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group 2012
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3269044/ https://www.ncbi.nlm.nih.gov/pubmed/22355752 http://dx.doi.org/10.1038/srep00239

Ejemplares similares

Global investigation of protein–protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences
por: Pitre, S., et al.
Publicado: (2008)

Phosphatase Complex Pph3/Psy2 Is Involved in Regulation of Efficient Non-Homologous End-Joining Pathway in the Yeast Saccharomyces cerevisiae
por: Omidi, Katayoun, et al.
Publicado: (2014)

Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences
por: Amos-Binks, Adam, et al.
Publicado: (2011)

PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs
por: Pitre, Sylvain, et al.
Publicado: (2006)

In Silico Engineering of Synthetic Binding Proteins from Random Amino Acid Sequences
por: Burnside, Daniel, et al.
Publicado: (2018)

Evolution of protein-protein interaction networks in yeast
por: Schoenrock, Andrew, et al.
Publicado: (2017)

Efficient prediction of human protein-protein interactions at a global scale
por: Schoenrock, Andrew, et al.
Publicado: (2014)

The conserved Tpk1 regulates non-homologous end joining double-strand break repair by phosphorylation of Nej1, a homolog of the human XLF
por: Jessulat, Matthew, et al.
Publicado: (2021)

A computational approach to rapidly design peptides that detect SARS-CoV-2 surface protein S
por: Hajikarimlou, Maryam, et al.
Publicado: (2022)

Peptides of a Feather: How Computation Is Taking Peptide Therapeutics under Its Wing
por: Kazmirchuk, Thomas David Daniel, et al.
Publicado: (2023)

A Correlation between 3′-UTR of OXA1 Gene and Yeast Mitochondrial Translation
por: Hajikarimlou, Maryam, et al.
Publicado: (2023)

PIPE4: Fast PPI Predictor for Comprehensive Inter- and Cross-Species Interactomes
por: Dick, Kevin, et al.
Publicado: (2020)

Identifying new variation at the J locus, previously identified as e6, in long juvenile ‘Paranagoiana’ soybean
por: Nissan, Nour, et al.
Publicado: (2021)

A Broad Review of Soybean Research on the Ongoing Race to Overcome Soybean Cyst Nematode
por: Nissan, Nour, et al.
Publicado: (2022)

Lithium Chloride Sensitivity in Yeast and Regulation of Translation
por: Hajikarimlou, Maryam, et al.
Publicado: (2020)

Large-scale data mining pipeline for identifying novel soybean genes involved in resistance against the soybean cyst nematode
por: Nissan, Nour, et al.
Publicado: (2023)

Sensitivity of yeast to lithium chloride connects the activity of YTA6 and YPR096C to translation of structured mRNAs
por: Hajikarimlou, Maryam, et al.
Publicado: (2020)

Chemical-genetic profile analysis in yeast suggests that a previously uncharacterized open reading frame, YBR261C, affects protein synthesis
por: Alamgir, Md, et al.
Publicado: (2008)

Chemical-genetic profile analysis of five inhibitory compounds in yeast
por: Alamgir, Md, et al.
Publicado: (2010)

P-TarPmiR accurately predicts plant-specific miRNA targets
por: Ajila, Victoria, et al.
Publicado: (2023)

Zinc oxide and silver nanoparticles toxicity in the baker's yeast, Saccharomyces cerevisiae
por: Galván Márquez, Imelda, et al.
Publicado: (2018)

Genome-wide analysis of cold imbibition stress in soybean, Glycine max
por: Haidar, Siwar, et al.
Publicado: (2023)

Novel QTL for Low Seed Cadmium Accumulation in Soybean
por: Nissan, Nour, et al.
Publicado: (2022)

Propagation of Fibrillar Structural Forms in Proteins Stopped by Naturally Occurring Short Polypeptide Chain Fragments
por: Roterman, Irena, et al.
Publicado: (2017)

Colony size measurement of the yeast gene deletion strains for functional genomics
por: Memarian, Negar, et al.
Publicado: (2007)

The sensitivity of the yeast, Saccharomyces cerevisiae, to acetic acid is influenced by DOM34 and RPL36A
por: Samanfar, Bahram, et al.
Publicado: (2017)

DBP7 and YRF1-6 Are Involved in Cell Sensitivity to LiCl by Regulating the Translation of PGM2 mRNA
por: Jagadeesan, Sasi Kumar, et al.
Publicado: (2023)

GmSWEET29 and Paralog GmSWEET34 Are Differentially Expressed between Soybeans Grown in Eastern and Western Canada
por: Hooker, Julia C., et al.
Publicado: (2022)

Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli
por: Babu, Mohan, et al.
Publicado: (2014)

A common spectrum of polypeptides occurs in secretion granule membranes of different exocrine glands
Publicado: (1986)

Differential gene expression provides leads to environmentally regulated soybean seed protein content
por: Hooker, Julia C., et al.
Publicado: (2023)

A Multi-Year, Multi-Cultivar Approach to Differential Expression Analysis of High- and Low-Protein Soybean (Glycine max)
por: Hooker, Julia C., et al.
Publicado: (2022)

Ribosome-Dependent ATPase Interacts with Conserved Membrane Protein in Escherichia coli to Modulate Protein Synthesis and Oxidative Phosphorylation
por: Babu, Mohan, et al.
Publicado: (2011)

Rapid chain tracing of polypeptide backbones in electron-density maps
por: Terwilliger, Thomas C.
Publicado: (2010)

A clinically relevant polymorphism in the Na(+)/taurocholate cotransporting polypeptide (NTCP) occurs at a rheostat position
por: Ruggiero, Melissa J., et al.
Publicado: (2020)

Hippocampal Global Remapping Can Occur without Input from the Medial Entorhinal Cortex
por: Schlesiger, Magdalene I., et al.
Publicado: (2018)

Mapping Microproteins and ncRNA-Encoded Polypeptides in Different Mouse Tissues
por: Pan, Ni, et al.
Publicado: (2021)

The Synthesis of Truncated Polypeptides for Immune Surveillance and Viral Evasion
por: Cardinaud, Sylvain, et al.
Publicado: (2010)

Ice Growth Inhibition in Antifreeze Polypeptide Solution by Short-Time Solution Preheating
por: Nishi, Naoto, et al.
Publicado: (2016)

Heavy metal sensitivities of gene deletion strains for ITT1 and RPS1A connect their activities to the expression of URE2, a key gene involved in metal detoxification in yeast
por: Moteshareie, Houman, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_40eb68gl32b2ferp8ib5lgmvg5