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Boolean Models of Biosurfactants Production in Pseudomonas fluorescens

Cyclolipopeptides (CLPs) are biosurfactants produced by numerous Pseudomonas fluorescens strains. CLP production is known to be regulated at least by the GacA/GacS two-component pathway, but the full regulatory network is yet largely unknown. In the clinical strain MFN1032, CLP production is abolish...

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Autores principales: Richard, Adrien, Rossignol, Gaelle, Comet, Jean-Paul, Bernot, Gilles, Guespin-Michel, Jannine, Merieau, Annabelle
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3269426/
https://www.ncbi.nlm.nih.gov/pubmed/22303435
http://dx.doi.org/10.1371/journal.pone.0024651
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author Richard, Adrien
Rossignol, Gaelle
Comet, Jean-Paul
Bernot, Gilles
Guespin-Michel, Jannine
Merieau, Annabelle
author_facet Richard, Adrien
Rossignol, Gaelle
Comet, Jean-Paul
Bernot, Gilles
Guespin-Michel, Jannine
Merieau, Annabelle
author_sort Richard, Adrien
collection PubMed
description Cyclolipopeptides (CLPs) are biosurfactants produced by numerous Pseudomonas fluorescens strains. CLP production is known to be regulated at least by the GacA/GacS two-component pathway, but the full regulatory network is yet largely unknown. In the clinical strain MFN1032, CLP production is abolished by a mutation in the phospholipase C gene ([Image: see text]) and not restored by [Image: see text] complementation. Their production is also subject to phenotypic variation. We used a modelling approach with Boolean networks, which takes into account all these observations concerning CLP production without any assumption on the topology of the considered network. Intensive computation yielded numerous models that satisfy these properties. All models minimizing the number of components point to a bistability in CLP production, which requires the presence of a yet unknown key self-inducible regulator. Furthermore, all suggest that a set of yet unexplained phenotypic variants might also be due to this epigenetic switch. The simplest of these Boolean networks was used to propose a biological regulatory network for CLP production. This modelling approach has allowed a possible regulation to be unravelled and an unusual behaviour of CLP production in P. fluorescens to be explained.
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spelling pubmed-32694262012-02-02 Boolean Models of Biosurfactants Production in Pseudomonas fluorescens Richard, Adrien Rossignol, Gaelle Comet, Jean-Paul Bernot, Gilles Guespin-Michel, Jannine Merieau, Annabelle PLoS One Research Article Cyclolipopeptides (CLPs) are biosurfactants produced by numerous Pseudomonas fluorescens strains. CLP production is known to be regulated at least by the GacA/GacS two-component pathway, but the full regulatory network is yet largely unknown. In the clinical strain MFN1032, CLP production is abolished by a mutation in the phospholipase C gene ([Image: see text]) and not restored by [Image: see text] complementation. Their production is also subject to phenotypic variation. We used a modelling approach with Boolean networks, which takes into account all these observations concerning CLP production without any assumption on the topology of the considered network. Intensive computation yielded numerous models that satisfy these properties. All models minimizing the number of components point to a bistability in CLP production, which requires the presence of a yet unknown key self-inducible regulator. Furthermore, all suggest that a set of yet unexplained phenotypic variants might also be due to this epigenetic switch. The simplest of these Boolean networks was used to propose a biological regulatory network for CLP production. This modelling approach has allowed a possible regulation to be unravelled and an unusual behaviour of CLP production in P. fluorescens to be explained. Public Library of Science 2012-01-31 /pmc/articles/PMC3269426/ /pubmed/22303435 http://dx.doi.org/10.1371/journal.pone.0024651 Text en Richard et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Richard, Adrien
Rossignol, Gaelle
Comet, Jean-Paul
Bernot, Gilles
Guespin-Michel, Jannine
Merieau, Annabelle
Boolean Models of Biosurfactants Production in Pseudomonas fluorescens
title Boolean Models of Biosurfactants Production in Pseudomonas fluorescens
title_full Boolean Models of Biosurfactants Production in Pseudomonas fluorescens
title_fullStr Boolean Models of Biosurfactants Production in Pseudomonas fluorescens
title_full_unstemmed Boolean Models of Biosurfactants Production in Pseudomonas fluorescens
title_short Boolean Models of Biosurfactants Production in Pseudomonas fluorescens
title_sort boolean models of biosurfactants production in pseudomonas fluorescens
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3269426/
https://www.ncbi.nlm.nih.gov/pubmed/22303435
http://dx.doi.org/10.1371/journal.pone.0024651
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