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Force Measurement Enabling Precise Analysis by Dynamic Force Spectroscopy

Dynamic force spectroscopy (DFS) makes it possible to investigate specific interactions between two molecules such as ligand-receptor pairs at the single-molecule level. In the DFS method based on the Bell-Evans model, the unbinding force applied to a molecular bond is increased at a constant rate,...

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Detalles Bibliográficos
Autores principales: Taninaka, Atsushi, Hirano, Yuuichi, Takeuchi, Osamu, Shigekawa, Hidemi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Molecular Diversity Preservation International (MDPI) 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3269697/
https://www.ncbi.nlm.nih.gov/pubmed/22312263
http://dx.doi.org/10.3390/ijms13010453
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author Taninaka, Atsushi
Hirano, Yuuichi
Takeuchi, Osamu
Shigekawa, Hidemi
author_facet Taninaka, Atsushi
Hirano, Yuuichi
Takeuchi, Osamu
Shigekawa, Hidemi
author_sort Taninaka, Atsushi
collection PubMed
description Dynamic force spectroscopy (DFS) makes it possible to investigate specific interactions between two molecules such as ligand-receptor pairs at the single-molecule level. In the DFS method based on the Bell-Evans model, the unbinding force applied to a molecular bond is increased at a constant rate, and the force required to rupture the molecular bond is measured. By analyzing the relationship between the modal rupture force and the logarithm of the loading rate, microscopic potential barrier landscapes and the lifetimes of bonds can be obtained. However, the results obtained, for example, in the case of streptavidin/biotin complexes, have differed among previous studies and some results have been inconsistent with theoretical predictions. In this study, using an atomic force microscopy technique that enables the precise analysis of molecular interactions on the basis of DFS, we investigated the effect of the sampling rate on DFS analysis. The shape of rupture force histograms, for example, was significantly deformed at a sampling rate of 1 kHz in comparison with that of histograms obtained at 100 kHz, indicating the fundamental importance of ensuring suitable experimental conditions for further advances in the DFS method.
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spelling pubmed-32696972012-02-06 Force Measurement Enabling Precise Analysis by Dynamic Force Spectroscopy Taninaka, Atsushi Hirano, Yuuichi Takeuchi, Osamu Shigekawa, Hidemi Int J Mol Sci Article Dynamic force spectroscopy (DFS) makes it possible to investigate specific interactions between two molecules such as ligand-receptor pairs at the single-molecule level. In the DFS method based on the Bell-Evans model, the unbinding force applied to a molecular bond is increased at a constant rate, and the force required to rupture the molecular bond is measured. By analyzing the relationship between the modal rupture force and the logarithm of the loading rate, microscopic potential barrier landscapes and the lifetimes of bonds can be obtained. However, the results obtained, for example, in the case of streptavidin/biotin complexes, have differed among previous studies and some results have been inconsistent with theoretical predictions. In this study, using an atomic force microscopy technique that enables the precise analysis of molecular interactions on the basis of DFS, we investigated the effect of the sampling rate on DFS analysis. The shape of rupture force histograms, for example, was significantly deformed at a sampling rate of 1 kHz in comparison with that of histograms obtained at 100 kHz, indicating the fundamental importance of ensuring suitable experimental conditions for further advances in the DFS method. Molecular Diversity Preservation International (MDPI) 2011-12-29 /pmc/articles/PMC3269697/ /pubmed/22312263 http://dx.doi.org/10.3390/ijms13010453 Text en © 2012 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0 This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Article
Taninaka, Atsushi
Hirano, Yuuichi
Takeuchi, Osamu
Shigekawa, Hidemi
Force Measurement Enabling Precise Analysis by Dynamic Force Spectroscopy
title Force Measurement Enabling Precise Analysis by Dynamic Force Spectroscopy
title_full Force Measurement Enabling Precise Analysis by Dynamic Force Spectroscopy
title_fullStr Force Measurement Enabling Precise Analysis by Dynamic Force Spectroscopy
title_full_unstemmed Force Measurement Enabling Precise Analysis by Dynamic Force Spectroscopy
title_short Force Measurement Enabling Precise Analysis by Dynamic Force Spectroscopy
title_sort force measurement enabling precise analysis by dynamic force spectroscopy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3269697/
https://www.ncbi.nlm.nih.gov/pubmed/22312263
http://dx.doi.org/10.3390/ijms13010453
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