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The efficacy of image correlation spectroscopy for characterization of the extracellular matrix

Image correlation spectroscopy (ICS) is known to be a useful tool for the evaluation of fiber width in the extracellular matrix. Here we evaluate a more general from of ICS fit parameters for fiber networks and arrive at a means of quantifying the fiber density, pore size and length which facilitate...

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Detalles Bibliográficos
Autores principales: Mir, Sadiq Mohammed, Baggett, Brenda, Utzinger, Urs
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Optical Society of America 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3269840/
https://www.ncbi.nlm.nih.gov/pubmed/22312576
http://dx.doi.org/10.1364/BOE.3.000215
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author Mir, Sadiq Mohammed
Baggett, Brenda
Utzinger, Urs
author_facet Mir, Sadiq Mohammed
Baggett, Brenda
Utzinger, Urs
author_sort Mir, Sadiq Mohammed
collection PubMed
description Image correlation spectroscopy (ICS) is known to be a useful tool for the evaluation of fiber width in the extracellular matrix. Here we evaluate a more general from of ICS fit parameters for fiber networks and arrive at a means of quantifying the fiber density, pore size and length which facilitates the characterization of the extracellular matrix. A simulation package was made to create images with different structural properties of fiber networks such as fiber orientation, width, fiber density and length. A pore finding algorithm was developed which determines the distribution of circular voids in the image. Collagen I hydrogels were prepared under different polymerization conditions for validation of our pore size algorithm with microscopy data. ICS parameters included amplitude, standard deviation and ellipticity and are shown to predict the structural properties of fiber networks in a quantitative manner. While the fiber width is related to the ICS sigma; the fiber density relates to the pore size distribution which correlates with the ICS amplitude in thresholded images. Fiber length is related to ICS ellipticity if the fibers have a preferred orientation. Findings from ICS and pore distribution algorithms were verified for both simulated and microscopy data. Based on these findings, we conclude that ICS can be used in the assessment of the extracellular matrix and the prediction of fiber orientation, width, density, length and matrix pore size.
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spelling pubmed-32698402012-02-06 The efficacy of image correlation spectroscopy for characterization of the extracellular matrix Mir, Sadiq Mohammed Baggett, Brenda Utzinger, Urs Biomed Opt Express Image Processing Image correlation spectroscopy (ICS) is known to be a useful tool for the evaluation of fiber width in the extracellular matrix. Here we evaluate a more general from of ICS fit parameters for fiber networks and arrive at a means of quantifying the fiber density, pore size and length which facilitates the characterization of the extracellular matrix. A simulation package was made to create images with different structural properties of fiber networks such as fiber orientation, width, fiber density and length. A pore finding algorithm was developed which determines the distribution of circular voids in the image. Collagen I hydrogels were prepared under different polymerization conditions for validation of our pore size algorithm with microscopy data. ICS parameters included amplitude, standard deviation and ellipticity and are shown to predict the structural properties of fiber networks in a quantitative manner. While the fiber width is related to the ICS sigma; the fiber density relates to the pore size distribution which correlates with the ICS amplitude in thresholded images. Fiber length is related to ICS ellipticity if the fibers have a preferred orientation. Findings from ICS and pore distribution algorithms were verified for both simulated and microscopy data. Based on these findings, we conclude that ICS can be used in the assessment of the extracellular matrix and the prediction of fiber orientation, width, density, length and matrix pore size. Optical Society of America 2012-01-03 /pmc/articles/PMC3269840/ /pubmed/22312576 http://dx.doi.org/10.1364/BOE.3.000215 Text en ©2012 Optical Society of America http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License, which permits download and redistribution, provided that the original work is properly cited. This license restricts the article from being modified or used commercially.
spellingShingle Image Processing
Mir, Sadiq Mohammed
Baggett, Brenda
Utzinger, Urs
The efficacy of image correlation spectroscopy for characterization of the extracellular matrix
title The efficacy of image correlation spectroscopy for characterization of the extracellular matrix
title_full The efficacy of image correlation spectroscopy for characterization of the extracellular matrix
title_fullStr The efficacy of image correlation spectroscopy for characterization of the extracellular matrix
title_full_unstemmed The efficacy of image correlation spectroscopy for characterization of the extracellular matrix
title_short The efficacy of image correlation spectroscopy for characterization of the extracellular matrix
title_sort efficacy of image correlation spectroscopy for characterization of the extracellular matrix
topic Image Processing
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3269840/
https://www.ncbi.nlm.nih.gov/pubmed/22312576
http://dx.doi.org/10.1364/BOE.3.000215
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