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Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex

In this work we combine machine learning methods and graph theoretical analysis to investigate gender associated differences in resting state brain network connectivity. The set of all correlations computed from the fMRI resting state data is used as input features for classification. Two ensemble l...

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Detalles Bibliográficos
Autores principales: Casanova, R, Whitlow, C.T, Wagner, B, Espeland, M.A, Maldjian, J.A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Bentham Open 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3271304/
https://www.ncbi.nlm.nih.gov/pubmed/22312418
http://dx.doi.org/10.2174/1874440001206010001
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author Casanova, R
Whitlow, C.T
Wagner, B
Espeland, M.A
Maldjian, J.A
author_facet Casanova, R
Whitlow, C.T
Wagner, B
Espeland, M.A
Maldjian, J.A
author_sort Casanova, R
collection PubMed
description In this work we combine machine learning methods and graph theoretical analysis to investigate gender associated differences in resting state brain network connectivity. The set of all correlations computed from the fMRI resting state data is used as input features for classification. Two ensemble learning methods are used to perform the detection of the set of discriminative edges between groups (males vs. females) of brain networks: 1) Random Forest and 2) an ensemble method based on least angle shrinkage and selection operator (lasso) regressors. Permutation testing is used not only to assess significance of classification accuracy but also to evaluate significance of feature selection. Finally, these methods are applied to data downloaded from the Connectome Project website. Our results suggest that gender differences in brain function may be related to sexually dimorphic regional connectivity between specific critical nodes via gender-discriminative edges.
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spelling pubmed-32713042012-02-06 Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex Casanova, R Whitlow, C.T Wagner, B Espeland, M.A Maldjian, J.A Open Neuroimag J Article In this work we combine machine learning methods and graph theoretical analysis to investigate gender associated differences in resting state brain network connectivity. The set of all correlations computed from the fMRI resting state data is used as input features for classification. Two ensemble learning methods are used to perform the detection of the set of discriminative edges between groups (males vs. females) of brain networks: 1) Random Forest and 2) an ensemble method based on least angle shrinkage and selection operator (lasso) regressors. Permutation testing is used not only to assess significance of classification accuracy but also to evaluate significance of feature selection. Finally, these methods are applied to data downloaded from the Connectome Project website. Our results suggest that gender differences in brain function may be related to sexually dimorphic regional connectivity between specific critical nodes via gender-discriminative edges. Bentham Open 2012-01-26 /pmc/articles/PMC3271304/ /pubmed/22312418 http://dx.doi.org/10.2174/1874440001206010001 Text en © Casanova et al.; Licensee Bentham Open. http://creativecommons.org/licenses/by-nc/3.0/ This is an open access article licensed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/) which permits unrestricted, non-commercial use, distribution and reproduction in any medium, provided the work is properly cited.
spellingShingle Article
Casanova, R
Whitlow, C.T
Wagner, B
Espeland, M.A
Maldjian, J.A
Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex
title Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex
title_full Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex
title_fullStr Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex
title_full_unstemmed Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex
title_short Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex
title_sort combining graph and machine learning methods to analyze differences in functional connectivity across sex
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3271304/
https://www.ncbi.nlm.nih.gov/pubmed/22312418
http://dx.doi.org/10.2174/1874440001206010001
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