Cargando…
Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex
In this work we combine machine learning methods and graph theoretical analysis to investigate gender associated differences in resting state brain network connectivity. The set of all correlations computed from the fMRI resting state data is used as input features for classification. Two ensemble l...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Bentham Open
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3271304/ https://www.ncbi.nlm.nih.gov/pubmed/22312418 http://dx.doi.org/10.2174/1874440001206010001 |
_version_ | 1782222683694432256 |
---|---|
author | Casanova, R Whitlow, C.T Wagner, B Espeland, M.A Maldjian, J.A |
author_facet | Casanova, R Whitlow, C.T Wagner, B Espeland, M.A Maldjian, J.A |
author_sort | Casanova, R |
collection | PubMed |
description | In this work we combine machine learning methods and graph theoretical analysis to investigate gender associated differences in resting state brain network connectivity. The set of all correlations computed from the fMRI resting state data is used as input features for classification. Two ensemble learning methods are used to perform the detection of the set of discriminative edges between groups (males vs. females) of brain networks: 1) Random Forest and 2) an ensemble method based on least angle shrinkage and selection operator (lasso) regressors. Permutation testing is used not only to assess significance of classification accuracy but also to evaluate significance of feature selection. Finally, these methods are applied to data downloaded from the Connectome Project website. Our results suggest that gender differences in brain function may be related to sexually dimorphic regional connectivity between specific critical nodes via gender-discriminative edges. |
format | Online Article Text |
id | pubmed-3271304 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Bentham Open |
record_format | MEDLINE/PubMed |
spelling | pubmed-32713042012-02-06 Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex Casanova, R Whitlow, C.T Wagner, B Espeland, M.A Maldjian, J.A Open Neuroimag J Article In this work we combine machine learning methods and graph theoretical analysis to investigate gender associated differences in resting state brain network connectivity. The set of all correlations computed from the fMRI resting state data is used as input features for classification. Two ensemble learning methods are used to perform the detection of the set of discriminative edges between groups (males vs. females) of brain networks: 1) Random Forest and 2) an ensemble method based on least angle shrinkage and selection operator (lasso) regressors. Permutation testing is used not only to assess significance of classification accuracy but also to evaluate significance of feature selection. Finally, these methods are applied to data downloaded from the Connectome Project website. Our results suggest that gender differences in brain function may be related to sexually dimorphic regional connectivity between specific critical nodes via gender-discriminative edges. Bentham Open 2012-01-26 /pmc/articles/PMC3271304/ /pubmed/22312418 http://dx.doi.org/10.2174/1874440001206010001 Text en © Casanova et al.; Licensee Bentham Open. http://creativecommons.org/licenses/by-nc/3.0/ This is an open access article licensed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/) which permits unrestricted, non-commercial use, distribution and reproduction in any medium, provided the work is properly cited. |
spellingShingle | Article Casanova, R Whitlow, C.T Wagner, B Espeland, M.A Maldjian, J.A Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex |
title | Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex |
title_full | Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex |
title_fullStr | Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex |
title_full_unstemmed | Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex |
title_short | Combining Graph and Machine Learning Methods to Analyze Differences in Functional Connectivity Across Sex |
title_sort | combining graph and machine learning methods to analyze differences in functional connectivity across sex |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3271304/ https://www.ncbi.nlm.nih.gov/pubmed/22312418 http://dx.doi.org/10.2174/1874440001206010001 |
work_keys_str_mv | AT casanovar combininggraphandmachinelearningmethodstoanalyzedifferencesinfunctionalconnectivityacrosssex AT whitlowct combininggraphandmachinelearningmethodstoanalyzedifferencesinfunctionalconnectivityacrosssex AT wagnerb combininggraphandmachinelearningmethodstoanalyzedifferencesinfunctionalconnectivityacrosssex AT espelandma combininggraphandmachinelearningmethodstoanalyzedifferencesinfunctionalconnectivityacrosssex AT maldjianja combininggraphandmachinelearningmethodstoanalyzedifferencesinfunctionalconnectivityacrosssex |