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Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1

The Gram-negative bacterium Sideroxydans lithotrophicus ES-1 (ES-1) grows on FeCO(3) or FeS at oxic–anoxic interfaces at circumneutral pH, and the ES-1-mediated Fe(II) oxidation occurs extracellularly. However, the molecular mechanisms underlying ES-1’s ability to oxidize Fe(II) remain unknown. Surv...

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Autores principales: Liu, Juan, Wang, Zheming, Belchik, Sara M., Edwards, Marcus J., Liu, Chongxuan, Kennedy, David W., Merkley, Eric D., Lipton, Mary S., Butt, Julea N., Richardson, David J., Zachara, John M., Fredrickson, James K., Rosso, Kevin M., Shi, Liang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Research Foundation 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3274759/
https://www.ncbi.nlm.nih.gov/pubmed/22347878
http://dx.doi.org/10.3389/fmicb.2012.00037
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author Liu, Juan
Wang, Zheming
Belchik, Sara M.
Edwards, Marcus J.
Liu, Chongxuan
Kennedy, David W.
Merkley, Eric D.
Lipton, Mary S.
Butt, Julea N.
Richardson, David J.
Zachara, John M.
Fredrickson, James K.
Rosso, Kevin M.
Shi, Liang
author_facet Liu, Juan
Wang, Zheming
Belchik, Sara M.
Edwards, Marcus J.
Liu, Chongxuan
Kennedy, David W.
Merkley, Eric D.
Lipton, Mary S.
Butt, Julea N.
Richardson, David J.
Zachara, John M.
Fredrickson, James K.
Rosso, Kevin M.
Shi, Liang
author_sort Liu, Juan
collection PubMed
description The Gram-negative bacterium Sideroxydans lithotrophicus ES-1 (ES-1) grows on FeCO(3) or FeS at oxic–anoxic interfaces at circumneutral pH, and the ES-1-mediated Fe(II) oxidation occurs extracellularly. However, the molecular mechanisms underlying ES-1’s ability to oxidize Fe(II) remain unknown. Survey of the ES-1 genome for candidate genes for microbial extracellular Fe(II) oxidation revealed that it contained a three-gene cluster encoding homologs of Shewanella oneidensis MR-1 (MR-1) MtrA, MtrB, and CymA that are involved in extracellular Fe(III) reduction. Homologs of MtrA and MtrB were also previously shown to be involved in extracellular Fe(II) oxidation by Rhodopseudomonas palustris TIE-1. To distinguish them from those found in MR-1, the identified homologs were named MtoAB and CymA(ES-1). Cloned mtoA partially complemented an MR-1 mutant without MtrA with regards to ferrihydrite reduction. Characterization of purified MtoA showed that it was a decaheme c-type cytochrome and oxidized soluble Fe(II). Oxidation of Fe(II) by MtoA was pH- and Fe(II)-complexing ligand-dependent. Under conditions tested, MtoA oxidized Fe(II) from pH 7 to pH 9 with the optimal rate at pH 9. MtoA oxidized Fe(II) complexed with different ligands at different rates. The reaction rates followed the order Fe(II)Cl(2) >  Fe(II)–citrate > Fe(II)–NTA > Fe(II)–EDTA with the second-order rate constants ranging from 6.3 × 10(−3) μM(−1) s(−1) for oxidation of Fe(II)Cl(2) to 1.0 × 10(−3) μM(−1) s(−1) for oxidation of Fe(II)–EDTA. Thermodynamic modeling showed that redox reaction rates for the different Fe(II)-complexes correlated with their respective estimated reaction-free energies. Collectively, these results demonstrate that MtoA is a functional Fe(II)-oxidizing protein that, by working in concert with MtoB and CymA(ES-1), may oxidize Fe(II) at the bacterial surface and transfer released electrons across the bacterial cell envelope to the quinone pool in the inner membrane during extracellular Fe(II) oxidation by ES-1.
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spelling pubmed-32747592012-02-17 Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1 Liu, Juan Wang, Zheming Belchik, Sara M. Edwards, Marcus J. Liu, Chongxuan Kennedy, David W. Merkley, Eric D. Lipton, Mary S. Butt, Julea N. Richardson, David J. Zachara, John M. Fredrickson, James K. Rosso, Kevin M. Shi, Liang Front Microbiol Microbiology The Gram-negative bacterium Sideroxydans lithotrophicus ES-1 (ES-1) grows on FeCO(3) or FeS at oxic–anoxic interfaces at circumneutral pH, and the ES-1-mediated Fe(II) oxidation occurs extracellularly. However, the molecular mechanisms underlying ES-1’s ability to oxidize Fe(II) remain unknown. Survey of the ES-1 genome for candidate genes for microbial extracellular Fe(II) oxidation revealed that it contained a three-gene cluster encoding homologs of Shewanella oneidensis MR-1 (MR-1) MtrA, MtrB, and CymA that are involved in extracellular Fe(III) reduction. Homologs of MtrA and MtrB were also previously shown to be involved in extracellular Fe(II) oxidation by Rhodopseudomonas palustris TIE-1. To distinguish them from those found in MR-1, the identified homologs were named MtoAB and CymA(ES-1). Cloned mtoA partially complemented an MR-1 mutant without MtrA with regards to ferrihydrite reduction. Characterization of purified MtoA showed that it was a decaheme c-type cytochrome and oxidized soluble Fe(II). Oxidation of Fe(II) by MtoA was pH- and Fe(II)-complexing ligand-dependent. Under conditions tested, MtoA oxidized Fe(II) from pH 7 to pH 9 with the optimal rate at pH 9. MtoA oxidized Fe(II) complexed with different ligands at different rates. The reaction rates followed the order Fe(II)Cl(2) >  Fe(II)–citrate > Fe(II)–NTA > Fe(II)–EDTA with the second-order rate constants ranging from 6.3 × 10(−3) μM(−1) s(−1) for oxidation of Fe(II)Cl(2) to 1.0 × 10(−3) μM(−1) s(−1) for oxidation of Fe(II)–EDTA. Thermodynamic modeling showed that redox reaction rates for the different Fe(II)-complexes correlated with their respective estimated reaction-free energies. Collectively, these results demonstrate that MtoA is a functional Fe(II)-oxidizing protein that, by working in concert with MtoB and CymA(ES-1), may oxidize Fe(II) at the bacterial surface and transfer released electrons across the bacterial cell envelope to the quinone pool in the inner membrane during extracellular Fe(II) oxidation by ES-1. Frontiers Research Foundation 2012-02-08 /pmc/articles/PMC3274759/ /pubmed/22347878 http://dx.doi.org/10.3389/fmicb.2012.00037 Text en Copyright © 2012 Liu, Wang, Belchik, Edwards, Liu, Kennedy, Merkley, Lipton, Butt, Richardson, Zachara, Fredrickson, Rosso and Shi. http://www.frontiersin.org/licenseagreement This is an open-access article distributed under the terms of the Creative Commons Attribution Non Commercial License, which permits non-commercial use, distribution, and reproduction in other forums, provided the original authors and source are credited.
spellingShingle Microbiology
Liu, Juan
Wang, Zheming
Belchik, Sara M.
Edwards, Marcus J.
Liu, Chongxuan
Kennedy, David W.
Merkley, Eric D.
Lipton, Mary S.
Butt, Julea N.
Richardson, David J.
Zachara, John M.
Fredrickson, James K.
Rosso, Kevin M.
Shi, Liang
Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1
title Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1
title_full Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1
title_fullStr Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1
title_full_unstemmed Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1
title_short Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1
title_sort identification and characterization of mtoa: a decaheme c-type cytochrome of the neutrophilic fe(ii)-oxidizing bacterium sideroxydans lithotrophicus es-1
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3274759/
https://www.ncbi.nlm.nih.gov/pubmed/22347878
http://dx.doi.org/10.3389/fmicb.2012.00037
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