Cargando…

Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data

Detalles Bibliográficos
Autores principales:	Schultheiss, Sebastian J, Jean, Géraldine, Behr, Jonas, Bohnert, Regina, Drewe, Philipp, Görnitz, Nico, Kahles, André, Mudrakarta, Pramod, Sreedharan, Vipin T, Zeller, Georg, Rätsch, Gunnar
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Oral Presentation
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3277255/ http://dx.doi.org/10.1186/1471-2105-12-S11-A7

Ejemplares similares

Oqtans: a multifunctional workbench for RNA-seq data analysis
por: Sreedharan, Vipin T, et al.
Publicado: (2014)

Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis
por: Sreedharan, Vipin T., et al.
Publicado: (2014)

MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples
por: Behr, Jonas, et al.
Publicado: (2013)

Accurate detection of differential RNA processing
por: Drewe, Philipp, et al.
Publicado: (2013)

Transcript quantification with RNA-Seq data
por: Bohnert, Regina, et al.
Publicado: (2009)

Multiple reference genomes and transcriptomes for Arabidopsis thaliana
por: Gan, Xiangchao, et al.
Publicado: (2011)

MMR: a tool for read multi-mapper resolution
por: Kahles, André, et al.
Publicado: (2016)

KIRMES: kernel-based identification of regulatory modules in euchromatic sequences
por: Schultheiss, Sebastian J, et al.
Publicado: (2009)

rQuant.web: a tool for RNA-Seq-based transcript quantitation
por: Bohnert, Regina, et al.
Publicado: (2010)

RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints
por: Zhong, Yi, et al.
Publicado: (2017)

wft4galaxy: a workflow testing tool for galaxy
por: Piras, Marco Enrico, et al.
Publicado: (2017)

SVM2Motif—Reconstructing Overlapping DNA Sequence Motifs by Mimicking an SVM Predictor
por: Vidovic, Marina M. -C., et al.
Publicado: (2015)

The Tumor Dynamism Is the Dark Matter of the NGS Galaxy: How to Understand It?
por: Ottaiano, Alessandro, et al.
Publicado: (2021)

OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows
por: Aranguren, Mikel Egaña, et al.
Publicado: (2013)

NGS for the diagnosis of autoinflammatory diseases: the experience of Montpellier
por: Sarrabay, G, et al.
Publicado: (2015)

Lossless indexing with counting de Bruijn graphs
por: Karasikov, Mikhail, et al.
Publicado: (2022)

Tavaxy: Integrating Taverna and Galaxy workflows with cloud computing support
por: Abouelhoda, Mohamed, et al.
Publicado: (2012)

Enhanced reproducibility of SADI web service workflows with Galaxy and Docker
por: Aranguren, Mikel Egaña, et al.
Publicado: (2015)

systemPipeR: NGS workflow and report generation environment
por: H. Backman, Tyler W., et al.
Publicado: (2016)

SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data
por: Kahles, André, et al.
Publicado: (2016)

Meta-Analysis Using NGS Data: The Veillonella Species in Dental Caries
por: Dame-Teixeira, Naile, et al.
Publicado: (2021)

Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology
por: Cock, Peter J.A., et al.
Publicado: (2013)

Flexible and Accessible Workflows for Improved Proteogenomic Analysis Using the Galaxy Framework
por: Jagtap, Pratik D., et al.
Publicado: (2014)

Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases
por: Spoor, Shawna, et al.
Publicado: (2020)

GCAC: galaxy workflow system for predictive model building for virtual screening
por: Bharti, Deepak R., et al.
Publicado: (2019)

Topology-based sparsification of graph annotations
por: Danciu, Daniel, et al.
Publicado: (2021)

Galaxy-M: a Galaxy workflow for processing and analyzing direct infusion and liquid chromatography mass spectrometry-based metabolomics data
por: Davidson, Robert L., et al.
Publicado: (2016)

Targeted exon capture and NGS to investigate an undefined myopathy reveal RYR1 variants
por: Stowell, Kathryn, et al.
Publicado: (2014)

MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data
por: Thang, Mike W.C., et al.
Publicado: (2019)

Influenza Classification Suite: An automated Galaxy workflow for rapid influenza sequence analysis
por: Eisler, Diane, et al.
Publicado: (2020)

ImmunoGlobulin galaxy (IGGalaxy) for simple determination and quantitation of immunoglobulin heavy chain rearrangements from NGS
por: Moorhouse, Michael J, et al.
Publicado: (2014)

Dynamic compression schemes for graph coloring
por: Mustafa, Harun, et al.
Publicado: (2019)

Sparse Binary Relation Representations for Genome Graph Annotation
por: Karasikov, Mikhail, et al.
Publicado: (2020)

Galaxy Integrated Omics: Web-based Standards-Compliant Workflows for Proteomics Informed by Transcriptomics
por: Fan, Jun, et al.
Publicado: (2015)

Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system
por: Oakley, Todd H, et al.
Publicado: (2014)

Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy
por: Weber, Ralf J. M., et al.
Publicado: (2016)

Galaxy Workflows for Web-based Bioinformatics Analysis of Aptamer High-throughput Sequencing Data
por: Thiel, William H
Publicado: (2016)

Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads
por: Le Bras, Yvan, et al.
Publicado: (2016)

SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing
por: Rozhoňová, Hana, et al.
Publicado: (2022)

An NGS Workflow Blueprint for DNA Sequencing Data and Its Application in Individualized Molecular Oncology
por: Li, Jian, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_c442j8h69tv2dlan43m4llimur