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Fractional deuteration applied to biomolecular solid-state NMR spectroscopy
Solid-state Nuclear Magnetic Resonance can provide detailed insight into structural and dynamical aspects of complex biomolecules. With increasing molecular size, advanced approaches for spectral simplification and the detection of medium to long-range contacts become of critical relevance. We have...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3277825/ https://www.ncbi.nlm.nih.gov/pubmed/22105305 http://dx.doi.org/10.1007/s10858-011-9585-2 |
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author | Nand, Deepak Cukkemane, Abhishek Becker, Stefan Baldus, Marc |
author_facet | Nand, Deepak Cukkemane, Abhishek Becker, Stefan Baldus, Marc |
author_sort | Nand, Deepak |
collection | PubMed |
description | Solid-state Nuclear Magnetic Resonance can provide detailed insight into structural and dynamical aspects of complex biomolecules. With increasing molecular size, advanced approaches for spectral simplification and the detection of medium to long-range contacts become of critical relevance. We have analyzed the protonation pattern of a membrane-embedded ion channel that was obtained from bacterial expression using protonated precursors and D(2)O medium. We find an overall reduction of 50% in protein protonation. High levels of deuteration at H(α) and H(β) positions reduce spectral congestion in ((1)H,(13)C,(15)N) correlation experiments and generate a transfer profile in longitudinal mixing schemes that can be tuned to specific resonance frequencies. At the same time, residual protons are predominantly found at amino-acid side-chain positions enhancing the prospects for obtaining side-chain resonance assignments and for detecting medium to long-range contacts. Fractional deuteration thus provides a powerful means to aid the structural analysis of complex biomolecules by solid-state NMR. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-011-9585-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-3277825 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-32778252012-02-21 Fractional deuteration applied to biomolecular solid-state NMR spectroscopy Nand, Deepak Cukkemane, Abhishek Becker, Stefan Baldus, Marc J Biomol NMR Article Solid-state Nuclear Magnetic Resonance can provide detailed insight into structural and dynamical aspects of complex biomolecules. With increasing molecular size, advanced approaches for spectral simplification and the detection of medium to long-range contacts become of critical relevance. We have analyzed the protonation pattern of a membrane-embedded ion channel that was obtained from bacterial expression using protonated precursors and D(2)O medium. We find an overall reduction of 50% in protein protonation. High levels of deuteration at H(α) and H(β) positions reduce spectral congestion in ((1)H,(13)C,(15)N) correlation experiments and generate a transfer profile in longitudinal mixing schemes that can be tuned to specific resonance frequencies. At the same time, residual protons are predominantly found at amino-acid side-chain positions enhancing the prospects for obtaining side-chain resonance assignments and for detecting medium to long-range contacts. Fractional deuteration thus provides a powerful means to aid the structural analysis of complex biomolecules by solid-state NMR. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-011-9585-2) contains supplementary material, which is available to authorized users. Springer Netherlands 2011-11-22 2012 /pmc/articles/PMC3277825/ /pubmed/22105305 http://dx.doi.org/10.1007/s10858-011-9585-2 Text en © The Author(s) 2011 https://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited. |
spellingShingle | Article Nand, Deepak Cukkemane, Abhishek Becker, Stefan Baldus, Marc Fractional deuteration applied to biomolecular solid-state NMR spectroscopy |
title | Fractional deuteration applied to biomolecular solid-state NMR spectroscopy |
title_full | Fractional deuteration applied to biomolecular solid-state NMR spectroscopy |
title_fullStr | Fractional deuteration applied to biomolecular solid-state NMR spectroscopy |
title_full_unstemmed | Fractional deuteration applied to biomolecular solid-state NMR spectroscopy |
title_short | Fractional deuteration applied to biomolecular solid-state NMR spectroscopy |
title_sort | fractional deuteration applied to biomolecular solid-state nmr spectroscopy |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3277825/ https://www.ncbi.nlm.nih.gov/pubmed/22105305 http://dx.doi.org/10.1007/s10858-011-9585-2 |
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