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Fractional deuteration applied to biomolecular solid-state NMR spectroscopy

Solid-state Nuclear Magnetic Resonance can provide detailed insight into structural and dynamical aspects of complex biomolecules. With increasing molecular size, advanced approaches for spectral simplification and the detection of medium to long-range contacts become of critical relevance. We have...

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Detalles Bibliográficos
Autores principales: Nand, Deepak, Cukkemane, Abhishek, Becker, Stefan, Baldus, Marc
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3277825/
https://www.ncbi.nlm.nih.gov/pubmed/22105305
http://dx.doi.org/10.1007/s10858-011-9585-2
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author Nand, Deepak
Cukkemane, Abhishek
Becker, Stefan
Baldus, Marc
author_facet Nand, Deepak
Cukkemane, Abhishek
Becker, Stefan
Baldus, Marc
author_sort Nand, Deepak
collection PubMed
description Solid-state Nuclear Magnetic Resonance can provide detailed insight into structural and dynamical aspects of complex biomolecules. With increasing molecular size, advanced approaches for spectral simplification and the detection of medium to long-range contacts become of critical relevance. We have analyzed the protonation pattern of a membrane-embedded ion channel that was obtained from bacterial expression using protonated precursors and D(2)O medium. We find an overall reduction of 50% in protein protonation. High levels of deuteration at H(α) and H(β) positions reduce spectral congestion in ((1)H,(13)C,(15)N) correlation experiments and generate a transfer profile in longitudinal mixing schemes that can be tuned to specific resonance frequencies. At the same time, residual protons are predominantly found at amino-acid side-chain positions enhancing the prospects for obtaining side-chain resonance assignments and for detecting medium to long-range contacts. Fractional deuteration thus provides a powerful means to aid the structural analysis of complex biomolecules by solid-state NMR. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-011-9585-2) contains supplementary material, which is available to authorized users.
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spelling pubmed-32778252012-02-21 Fractional deuteration applied to biomolecular solid-state NMR spectroscopy Nand, Deepak Cukkemane, Abhishek Becker, Stefan Baldus, Marc J Biomol NMR Article Solid-state Nuclear Magnetic Resonance can provide detailed insight into structural and dynamical aspects of complex biomolecules. With increasing molecular size, advanced approaches for spectral simplification and the detection of medium to long-range contacts become of critical relevance. We have analyzed the protonation pattern of a membrane-embedded ion channel that was obtained from bacterial expression using protonated precursors and D(2)O medium. We find an overall reduction of 50% in protein protonation. High levels of deuteration at H(α) and H(β) positions reduce spectral congestion in ((1)H,(13)C,(15)N) correlation experiments and generate a transfer profile in longitudinal mixing schemes that can be tuned to specific resonance frequencies. At the same time, residual protons are predominantly found at amino-acid side-chain positions enhancing the prospects for obtaining side-chain resonance assignments and for detecting medium to long-range contacts. Fractional deuteration thus provides a powerful means to aid the structural analysis of complex biomolecules by solid-state NMR. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s10858-011-9585-2) contains supplementary material, which is available to authorized users. Springer Netherlands 2011-11-22 2012 /pmc/articles/PMC3277825/ /pubmed/22105305 http://dx.doi.org/10.1007/s10858-011-9585-2 Text en © The Author(s) 2011 https://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited.
spellingShingle Article
Nand, Deepak
Cukkemane, Abhishek
Becker, Stefan
Baldus, Marc
Fractional deuteration applied to biomolecular solid-state NMR spectroscopy
title Fractional deuteration applied to biomolecular solid-state NMR spectroscopy
title_full Fractional deuteration applied to biomolecular solid-state NMR spectroscopy
title_fullStr Fractional deuteration applied to biomolecular solid-state NMR spectroscopy
title_full_unstemmed Fractional deuteration applied to biomolecular solid-state NMR spectroscopy
title_short Fractional deuteration applied to biomolecular solid-state NMR spectroscopy
title_sort fractional deuteration applied to biomolecular solid-state nmr spectroscopy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3277825/
https://www.ncbi.nlm.nih.gov/pubmed/22105305
http://dx.doi.org/10.1007/s10858-011-9585-2
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