Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

Motivation: High-throughput sequencing (HTS) technologies have made low-cost sequencing of large numbers of samples commonplace. An explosion in the type, not just number, of sequencing experiments has also taken place including genome re-sequencing, population-scale variation detection, whole trans...

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Detalles Bibliográficos
Autores principales: Carver, Tim, Harris, Simon R., Berriman, Matthew, Parkhill, Julian, McQuillan, Jacqueline A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Original Papers
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278759/
https://www.ncbi.nlm.nih.gov/pubmed/22199388
http://dx.doi.org/10.1093/bioinformatics/btr703
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author Carver, Tim
Harris, Simon R.
Berriman, Matthew
Parkhill, Julian
McQuillan, Jacqueline A.
author_facet Carver, Tim
Harris, Simon R.
Berriman, Matthew
Parkhill, Julian
McQuillan, Jacqueline A.
author_sort Carver, Tim
collection PubMed
description Motivation: High-throughput sequencing (HTS) technologies have made low-cost sequencing of large numbers of samples commonplace. An explosion in the type, not just number, of sequencing experiments has also taken place including genome re-sequencing, population-scale variation detection, whole transcriptome sequencing and genome-wide analysis of protein-bound nucleic acids. Results: We present Artemis as a tool for integrated visualization and computational analysis of different types of HTS datasets in the context of a reference genome and its corresponding annotation. Availability: Artemis is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute websites: http://www.sanger.ac.uk/resources/software/artemis/. Contact: artemis@sanger.ac.uk; tjc@sanger.ac.uk
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spelling pubmed-32787592012-02-15 Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data Carver, Tim Harris, Simon R. Berriman, Matthew Parkhill, Julian McQuillan, Jacqueline A. Bioinformatics Original Papers Motivation: High-throughput sequencing (HTS) technologies have made low-cost sequencing of large numbers of samples commonplace. An explosion in the type, not just number, of sequencing experiments has also taken place including genome re-sequencing, population-scale variation detection, whole transcriptome sequencing and genome-wide analysis of protein-bound nucleic acids. Results: We present Artemis as a tool for integrated visualization and computational analysis of different types of HTS datasets in the context of a reference genome and its corresponding annotation. Availability: Artemis is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute websites: http://www.sanger.ac.uk/resources/software/artemis/. Contact: artemis@sanger.ac.uk; tjc@sanger.ac.uk Oxford University Press 2012-02-15 2011-12-22 /pmc/articles/PMC3278759/ /pubmed/22199388 http://dx.doi.org/10.1093/bioinformatics/btr703 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Papers
Carver, Tim
Harris, Simon R.
Berriman, Matthew
Parkhill, Julian
McQuillan, Jacqueline A.
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
title Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
title_full Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
title_fullStr Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
title_full_unstemmed Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
title_short Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
title_sort artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
topic Original Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278759/
https://www.ncbi.nlm.nih.gov/pubmed/22199388
http://dx.doi.org/10.1093/bioinformatics/btr703
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