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Assessment of predictive models for chlorophyll-a concentration of a tropical lake

BACKGROUND: This study assesses four predictive ecological models; Fuzzy Logic (FL), Recurrent Artificial Neural Network (RANN), Hybrid Evolutionary Algorithm (HEA) and multiple linear regressions (MLR) to forecast chlorophyll- a concentration using limnological data from 2001 through 2004 of unstra...

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Autores principales: Malek, Sorayya, Syed Ahmad, Sharifah Mumtazah, Singh, Sarinder Kaur Kashmir, Milow, Pozi, Salleh, Aishah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278828/
https://www.ncbi.nlm.nih.gov/pubmed/22372859
http://dx.doi.org/10.1186/1471-2105-12-S13-S12
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author Malek, Sorayya
Syed Ahmad, Sharifah Mumtazah
Singh, Sarinder Kaur Kashmir
Milow, Pozi
Salleh, Aishah
author_facet Malek, Sorayya
Syed Ahmad, Sharifah Mumtazah
Singh, Sarinder Kaur Kashmir
Milow, Pozi
Salleh, Aishah
author_sort Malek, Sorayya
collection PubMed
description BACKGROUND: This study assesses four predictive ecological models; Fuzzy Logic (FL), Recurrent Artificial Neural Network (RANN), Hybrid Evolutionary Algorithm (HEA) and multiple linear regressions (MLR) to forecast chlorophyll- a concentration using limnological data from 2001 through 2004 of unstratified shallow, oligotrophic to mesotrophic tropical Putrajaya Lake (Malaysia). Performances of the models are assessed using Root Mean Square Error (RMSE), correlation coefficient (r), and Area under the Receiving Operating Characteristic (ROC) curve (AUC). Chlorophyll-a have been used to estimate algal biomass in aquatic ecosystem as it is common in most algae. Algal biomass indicates of the trophic status of a water body. Chlorophyll- a therefore, is an effective indicator for monitoring eutrophication which is a common problem of lakes and reservoirs all over the world. Assessments of these predictive models are necessary towards developing a reliable algorithm to estimate chlorophyll- a concentration for eutrophication management of tropical lakes. RESULTS: Same data set was used for models development and the data was divided into two sets; training and testing to avoid biasness in results. FL and RANN models were developed using parameters selected through sensitivity analysis. The selected variables were water temperature, pH, dissolved oxygen, ammonia nitrogen, nitrate nitrogen and Secchi depth. Dissolved oxygen, selected through stepwise procedure, was used to develop the MLR model. HEA model used parameters selected using genetic algorithm (GA). The selected parameters were pH, Secchi depth, dissolved oxygen and nitrate nitrogen. RMSE, r, and AUC values for MLR model were (4.60, 0.5, and 0.76), FL model were (4.49, 0.6, and 0.84), RANN model were (4.28, 0.7, and 0.79) and HEA model were (4.27, 0.7, and 0.82) respectively. Performance inconsistencies between four models in terms of performance criteria in this study resulted from the methodology used in measuring the performance. RMSE is based on the level of error of prediction whereas AUC is based on binary classification task. CONCLUSIONS: Overall, HEA produced the best performance in terms of RMSE, r, and AUC values. This was followed by FL, RANN, and MLR.
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spelling pubmed-32788282012-02-14 Assessment of predictive models for chlorophyll-a concentration of a tropical lake Malek, Sorayya Syed Ahmad, Sharifah Mumtazah Singh, Sarinder Kaur Kashmir Milow, Pozi Salleh, Aishah BMC Bioinformatics Proceedings BACKGROUND: This study assesses four predictive ecological models; Fuzzy Logic (FL), Recurrent Artificial Neural Network (RANN), Hybrid Evolutionary Algorithm (HEA) and multiple linear regressions (MLR) to forecast chlorophyll- a concentration using limnological data from 2001 through 2004 of unstratified shallow, oligotrophic to mesotrophic tropical Putrajaya Lake (Malaysia). Performances of the models are assessed using Root Mean Square Error (RMSE), correlation coefficient (r), and Area under the Receiving Operating Characteristic (ROC) curve (AUC). Chlorophyll-a have been used to estimate algal biomass in aquatic ecosystem as it is common in most algae. Algal biomass indicates of the trophic status of a water body. Chlorophyll- a therefore, is an effective indicator for monitoring eutrophication which is a common problem of lakes and reservoirs all over the world. Assessments of these predictive models are necessary towards developing a reliable algorithm to estimate chlorophyll- a concentration for eutrophication management of tropical lakes. RESULTS: Same data set was used for models development and the data was divided into two sets; training and testing to avoid biasness in results. FL and RANN models were developed using parameters selected through sensitivity analysis. The selected variables were water temperature, pH, dissolved oxygen, ammonia nitrogen, nitrate nitrogen and Secchi depth. Dissolved oxygen, selected through stepwise procedure, was used to develop the MLR model. HEA model used parameters selected using genetic algorithm (GA). The selected parameters were pH, Secchi depth, dissolved oxygen and nitrate nitrogen. RMSE, r, and AUC values for MLR model were (4.60, 0.5, and 0.76), FL model were (4.49, 0.6, and 0.84), RANN model were (4.28, 0.7, and 0.79) and HEA model were (4.27, 0.7, and 0.82) respectively. Performance inconsistencies between four models in terms of performance criteria in this study resulted from the methodology used in measuring the performance. RMSE is based on the level of error of prediction whereas AUC is based on binary classification task. CONCLUSIONS: Overall, HEA produced the best performance in terms of RMSE, r, and AUC values. This was followed by FL, RANN, and MLR. BioMed Central 2011-11-30 /pmc/articles/PMC3278828/ /pubmed/22372859 http://dx.doi.org/10.1186/1471-2105-12-S13-S12 Text en Copyright ©2011 Malek et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Proceedings
Malek, Sorayya
Syed Ahmad, Sharifah Mumtazah
Singh, Sarinder Kaur Kashmir
Milow, Pozi
Salleh, Aishah
Assessment of predictive models for chlorophyll-a concentration of a tropical lake
title Assessment of predictive models for chlorophyll-a concentration of a tropical lake
title_full Assessment of predictive models for chlorophyll-a concentration of a tropical lake
title_fullStr Assessment of predictive models for chlorophyll-a concentration of a tropical lake
title_full_unstemmed Assessment of predictive models for chlorophyll-a concentration of a tropical lake
title_short Assessment of predictive models for chlorophyll-a concentration of a tropical lake
title_sort assessment of predictive models for chlorophyll-a concentration of a tropical lake
topic Proceedings
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278828/
https://www.ncbi.nlm.nih.gov/pubmed/22372859
http://dx.doi.org/10.1186/1471-2105-12-S13-S12
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