Cargando…

Exploring geometric properties of gold nanoparticles using TEM images to explain their chaperone like activity for citrate synthase

Study on geometric properties of nanoparticles and their relation with biomolecular activities, especially protein is quite a new field to explore. This work was carried out towards this direction where images of gold nanoparticles obtained from transmission electron microscopy were processed to ext...

Descripción completa

Detalles Bibliográficos
Autores principales: Kaushik, Vikas, Lahiri, Tapobrata, Singha, Shantiswaroop, Dasgupta, Anjan Kumar, Mishra, Hrishikesh, Kumar, Upendra, Kumar, Rajeev
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3280484/
https://www.ncbi.nlm.nih.gov/pubmed/22355230
_version_ 1782223832448237568
author Kaushik, Vikas
Lahiri, Tapobrata
Singha, Shantiswaroop
Dasgupta, Anjan Kumar
Mishra, Hrishikesh
Kumar, Upendra
Kumar, Rajeev
author_facet Kaushik, Vikas
Lahiri, Tapobrata
Singha, Shantiswaroop
Dasgupta, Anjan Kumar
Mishra, Hrishikesh
Kumar, Upendra
Kumar, Rajeev
author_sort Kaushik, Vikas
collection PubMed
description Study on geometric properties of nanoparticles and their relation with biomolecular activities, especially protein is quite a new field to explore. This work was carried out towards this direction where images of gold nanoparticles obtained from transmission electron microscopy were processed to extract their size and area profile at different experimental conditions including and excluding a protein, citrate synthase. Since the images were ill-posed, texture of a context-window for each pixel was used as input to a back-propagation network architecture to obtain decision on its membership as nanoparticle. The segmented images were further analysed by k-means clustering to derive geometric properties of individual nanoparticles even from their assembled form. The extracted geometric information was found to be crucial to give a model featuring porous cage like configuration of nanoparticle assembly using which the chaperone like activity of gold nanoparticles can be explained.
format Online
Article
Text
id pubmed-3280484
institution National Center for Biotechnology Information
language English
publishDate 2011
publisher Biomedical Informatics
record_format MEDLINE/PubMed
spelling pubmed-32804842012-02-21 Exploring geometric properties of gold nanoparticles using TEM images to explain their chaperone like activity for citrate synthase Kaushik, Vikas Lahiri, Tapobrata Singha, Shantiswaroop Dasgupta, Anjan Kumar Mishra, Hrishikesh Kumar, Upendra Kumar, Rajeev Bioinformation Hypothesis Study on geometric properties of nanoparticles and their relation with biomolecular activities, especially protein is quite a new field to explore. This work was carried out towards this direction where images of gold nanoparticles obtained from transmission electron microscopy were processed to extract their size and area profile at different experimental conditions including and excluding a protein, citrate synthase. Since the images were ill-posed, texture of a context-window for each pixel was used as input to a back-propagation network architecture to obtain decision on its membership as nanoparticle. The segmented images were further analysed by k-means clustering to derive geometric properties of individual nanoparticles even from their assembled form. The extracted geometric information was found to be crucial to give a model featuring porous cage like configuration of nanoparticle assembly using which the chaperone like activity of gold nanoparticles can be explained. Biomedical Informatics 2011-12-10 /pmc/articles/PMC3280484/ /pubmed/22355230 Text en © 2011 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Hypothesis
Kaushik, Vikas
Lahiri, Tapobrata
Singha, Shantiswaroop
Dasgupta, Anjan Kumar
Mishra, Hrishikesh
Kumar, Upendra
Kumar, Rajeev
Exploring geometric properties of gold nanoparticles using TEM images to explain their chaperone like activity for citrate synthase
title Exploring geometric properties of gold nanoparticles using TEM images to explain their chaperone like activity for citrate synthase
title_full Exploring geometric properties of gold nanoparticles using TEM images to explain their chaperone like activity for citrate synthase
title_fullStr Exploring geometric properties of gold nanoparticles using TEM images to explain their chaperone like activity for citrate synthase
title_full_unstemmed Exploring geometric properties of gold nanoparticles using TEM images to explain their chaperone like activity for citrate synthase
title_short Exploring geometric properties of gold nanoparticles using TEM images to explain their chaperone like activity for citrate synthase
title_sort exploring geometric properties of gold nanoparticles using tem images to explain their chaperone like activity for citrate synthase
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3280484/
https://www.ncbi.nlm.nih.gov/pubmed/22355230
work_keys_str_mv AT kaushikvikas exploringgeometricpropertiesofgoldnanoparticlesusingtemimagestoexplaintheirchaperonelikeactivityforcitratesynthase
AT lahiritapobrata exploringgeometricpropertiesofgoldnanoparticlesusingtemimagestoexplaintheirchaperonelikeactivityforcitratesynthase
AT singhashantiswaroop exploringgeometricpropertiesofgoldnanoparticlesusingtemimagestoexplaintheirchaperonelikeactivityforcitratesynthase
AT dasguptaanjankumar exploringgeometricpropertiesofgoldnanoparticlesusingtemimagestoexplaintheirchaperonelikeactivityforcitratesynthase
AT mishrahrishikesh exploringgeometricpropertiesofgoldnanoparticlesusingtemimagestoexplaintheirchaperonelikeactivityforcitratesynthase
AT kumarupendra exploringgeometricpropertiesofgoldnanoparticlesusingtemimagestoexplaintheirchaperonelikeactivityforcitratesynthase
AT kumarrajeev exploringgeometricpropertiesofgoldnanoparticlesusingtemimagestoexplaintheirchaperonelikeactivityforcitratesynthase