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LogSpin: a simple, economical and fast method for RNA isolation from infected or healthy plants and other eukaryotic tissues

BACKGROUND: Rapid RNA extraction is commonly performed with commercial kits, which are very expensive and can involve toxic reagents. Most of these kits can be used with healthy plant tissues, but do not produce consistently high-quality RNA from necrotic fungus-infected tissues or fungal mycelium....

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Autores principales: Yaffe, Hila, Buxdorf, Kobi, Shapira, Illil, Ein-Gedi, Shachaf, Moyal-Ben Zvi, Michal, Fridman, Eyal, Moshelion, Menachem, Levy, Maggie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3282632/
https://www.ncbi.nlm.nih.gov/pubmed/22260178
http://dx.doi.org/10.1186/1756-0500-5-45
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author Yaffe, Hila
Buxdorf, Kobi
Shapira, Illil
Ein-Gedi, Shachaf
Moyal-Ben Zvi, Michal
Fridman, Eyal
Moshelion, Menachem
Levy, Maggie
author_facet Yaffe, Hila
Buxdorf, Kobi
Shapira, Illil
Ein-Gedi, Shachaf
Moyal-Ben Zvi, Michal
Fridman, Eyal
Moshelion, Menachem
Levy, Maggie
author_sort Yaffe, Hila
collection PubMed
description BACKGROUND: Rapid RNA extraction is commonly performed with commercial kits, which are very expensive and can involve toxic reagents. Most of these kits can be used with healthy plant tissues, but do not produce consistently high-quality RNA from necrotic fungus-infected tissues or fungal mycelium. FINDINGS: We report on the development of a rapid and relatively inexpensive method for total RNA extraction from plants and fungus-infected tissues, as well as from insects and fungi, based on guanidine hydrochloride buffer and common DNA extraction columns originally used for the extraction and purification of plasmids and cosmids. CONCLUSIONS: The proposed method can be used reproducibly for RNA isolation from a variety of plant species. It can also be used with infected plant tissue and fungal mycelia, which are typically recalcitrant to standard nucleic acid extraction procedures.
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spelling pubmed-32826322012-02-21 LogSpin: a simple, economical and fast method for RNA isolation from infected or healthy plants and other eukaryotic tissues Yaffe, Hila Buxdorf, Kobi Shapira, Illil Ein-Gedi, Shachaf Moyal-Ben Zvi, Michal Fridman, Eyal Moshelion, Menachem Levy, Maggie BMC Res Notes Technical Note BACKGROUND: Rapid RNA extraction is commonly performed with commercial kits, which are very expensive and can involve toxic reagents. Most of these kits can be used with healthy plant tissues, but do not produce consistently high-quality RNA from necrotic fungus-infected tissues or fungal mycelium. FINDINGS: We report on the development of a rapid and relatively inexpensive method for total RNA extraction from plants and fungus-infected tissues, as well as from insects and fungi, based on guanidine hydrochloride buffer and common DNA extraction columns originally used for the extraction and purification of plasmids and cosmids. CONCLUSIONS: The proposed method can be used reproducibly for RNA isolation from a variety of plant species. It can also be used with infected plant tissue and fungal mycelia, which are typically recalcitrant to standard nucleic acid extraction procedures. BioMed Central 2012-01-19 /pmc/articles/PMC3282632/ /pubmed/22260178 http://dx.doi.org/10.1186/1756-0500-5-45 Text en Copyright ©2012 Yaffe et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Technical Note
Yaffe, Hila
Buxdorf, Kobi
Shapira, Illil
Ein-Gedi, Shachaf
Moyal-Ben Zvi, Michal
Fridman, Eyal
Moshelion, Menachem
Levy, Maggie
LogSpin: a simple, economical and fast method for RNA isolation from infected or healthy plants and other eukaryotic tissues
title LogSpin: a simple, economical and fast method for RNA isolation from infected or healthy plants and other eukaryotic tissues
title_full LogSpin: a simple, economical and fast method for RNA isolation from infected or healthy plants and other eukaryotic tissues
title_fullStr LogSpin: a simple, economical and fast method for RNA isolation from infected or healthy plants and other eukaryotic tissues
title_full_unstemmed LogSpin: a simple, economical and fast method for RNA isolation from infected or healthy plants and other eukaryotic tissues
title_short LogSpin: a simple, economical and fast method for RNA isolation from infected or healthy plants and other eukaryotic tissues
title_sort logspin: a simple, economical and fast method for rna isolation from infected or healthy plants and other eukaryotic tissues
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3282632/
https://www.ncbi.nlm.nih.gov/pubmed/22260178
http://dx.doi.org/10.1186/1756-0500-5-45
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