DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization

The DiagHunter and GenoPix2D applications work together to enable genomic comparisons and exploration at both genome-wide and single-gene scales. DiagHunter identifies homologous regions (synteny blocks) within or between genomes. DiagHunter works efficiently with diverse, large datasets to predict...

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Detalles Bibliográficos
Autores principales: Cannon, Steven B, Kozik, Alexander, Chan, Brian, Michelmore, Richard, Young, Nevin D
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2003
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC328457/
https://www.ncbi.nlm.nih.gov/pubmed/14519203
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author Cannon, Steven B
Kozik, Alexander
Chan, Brian
Michelmore, Richard
Young, Nevin D
author_facet Cannon, Steven B
Kozik, Alexander
Chan, Brian
Michelmore, Richard
Young, Nevin D
author_sort Cannon, Steven B
collection PubMed
description The DiagHunter and GenoPix2D applications work together to enable genomic comparisons and exploration at both genome-wide and single-gene scales. DiagHunter identifies homologous regions (synteny blocks) within or between genomes. DiagHunter works efficiently with diverse, large datasets to predict extended and interrupted synteny blocks and to generate graphical and text output quickly. GenoPix2D allows interactive display of synteny blocks and other genomic features, as well as querying by annotation and by sequence similarity.
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spelling pubmed-3284572004-02-05 DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization Cannon, Steven B Kozik, Alexander Chan, Brian Michelmore, Richard Young, Nevin D Genome Biol Software The DiagHunter and GenoPix2D applications work together to enable genomic comparisons and exploration at both genome-wide and single-gene scales. DiagHunter identifies homologous regions (synteny blocks) within or between genomes. DiagHunter works efficiently with diverse, large datasets to predict extended and interrupted synteny blocks and to generate graphical and text output quickly. GenoPix2D allows interactive display of synteny blocks and other genomic features, as well as querying by annotation and by sequence similarity. BioMed Central 2003 2003-09-19 /pmc/articles/PMC328457/ /pubmed/14519203 Text en Copyright © 2003 Cannon et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL.
spellingShingle Software
Cannon, Steven B
Kozik, Alexander
Chan, Brian
Michelmore, Richard
Young, Nevin D
DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization
title DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization
title_full DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization
title_fullStr DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization
title_full_unstemmed DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization
title_short DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization
title_sort diaghunter and genopix2d: programs for genomic comparisons, large-scale homology discovery and visualization
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC328457/
https://www.ncbi.nlm.nih.gov/pubmed/14519203
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