Cargando…

SNP-PRAGE: SNP-based parametric robust analysis of gene set enrichment

BACKGROUND: The current genome-wide association (GWA) analysis mainly focuses on the single genetic variant, which may not reveal some the genetic variants that have small individual effects but large joint effects. Considering the multiple SNPs jointly in Genome-wide association (GWA) analysis can...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lee, Jaehoon, Ahn, Soyeon, Oh, Sohee, Weir, Bruce, Park, Taesung
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3287477/ https://www.ncbi.nlm.nih.gov/pubmed/22784568 http://dx.doi.org/10.1186/1752-0509-5-S2-S11

Ejemplares similares

A novel method to identify high order gene-gene interactions in genome-wide association studies: Gene-based MDR
por: Oh, Sohee, et al.
Publicado: (2012)

SNP set analysis for detecting disease association using exon sequence data
por: Wang, Ru, et al.
Publicado: (2011)

snpTree - a web-server to identify and construct SNP trees from whole genome sequence data
por: Leekitcharoenphon, Pimlapas, et al.
Publicado: (2012)

Classification tree for detection of single-nucleotide polymorphism (SNP)-by-SNP interactions related to heart disease: Framingham Heart Study
por: Yao, Li, et al.
Publicado: (2009)

Association tests based on the principal-component analysis
por: Oh, Sohee, et al.
Publicado: (2007)

UASIS: Universal Automatic SNP Identification System
por: Poo, Danny C C, et al.
Publicado: (2011)

Evaluating the accuracy of a functional SNP annotation system
por: Shen, Terry H, et al.
Publicado: (2009)

SNP and gene networks construction and analysis from classification of copy number variations data
por: Liu, Yang, et al.
Publicado: (2011)

Using penalized regression to predict phenotype from SNP data
por: Cherlin, Svetlana, et al.
Publicado: (2018)

Methods for detecting methylation by SNP interaction in GAW20 simulation
por: Daw, E. Warwick, et al.
Publicado: (2018)

Viability of in-house datamarting approaches for population genetics analysis of SNP genotypes
por: Amigo, Jorge, et al.
Publicado: (2009)

Large-scale computational identification of regulatory SNPs with rSNP-MAPPER
por: Riva, Alberto
Publicado: (2012)

Effect of the prior distribution of SNP effects on the estimation of total breeding value
por: Nadaf, Javad, et al.
Publicado: (2012)

Comparison of SNP-based and gene-based association studies in detecting rare variants using unrelated individuals
por: Tong, Liping, et al.
Publicado: (2011)

A strategy for QTL fine-mapping using a dense SNP map
por: Tarres, Joaquim, et al.
Publicado: (2009)

Elastic-net regularization approaches for genome-wide association studies of rheumatoid arthritis
por: Cho, Seoae, et al.
Publicado: (2009)

SNP@Promoter: a database of human SNPs (Single Nucleotide Polymorphisms) within the putative promoter regions
por: Kim, Byoung-Chul, et al.
Publicado: (2008)

Across-line SNP association study for (innate) immune and behavioral traits in laying hens
por: van der Poel, Jan J, et al.
Publicado: (2011)

EPIQ—efficient detection of SNP–SNP epistatic interactions for quantitative traits
por: Arkin, Ya’ara, et al.
Publicado: (2014)

QTL detection for a medium density SNP panel: comparison of different LD and LA methods
por: Demeure, Olivier, et al.
Publicado: (2010)

Simultaneous QTL detection and genomic breeding value estimation using high density SNP chips
por: Veerkamp, Roel F, et al.
Publicado: (2010)

Two combinatorial optimization problems for SNP discovery using base-specific cleavage and mass spectrometry
por: Chen, Xin, et al.
Publicado: (2012)

Finding pathway regulators: gene set approach using peak identification algorithms
por: Lee, Eunjee, et al.
Publicado: (2007)

MapNext: a software tool for spliced and unspliced alignments and SNP detection of short sequence reads
por: Bao, Hua, et al.
Publicado: (2009)

iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies
por: Piriyapongsa, Jittima, et al.
Publicado: (2012)

snpXplorer: a web application to explore human SNP-associations and annotate SNP-sets
por: Tesi, Niccolo, et al.
Publicado: (2021)

Using SNP array data to test for host genetic and breed effects on Porcine Reproductive and Respiratory Syndrome Viremia
por: Biffani, Stefano, et al.
Publicado: (2011)

Comparison of methods for estimation of genetic covariance matrix from SNP or pedigree data utilised to predict breeding value
por: Mucha, Sebastian, et al.
Publicado: (2010)

PREST-plus identifies pedigree errors and cryptic relatedness in the GAW18 sample using genome-wide SNP data
por: Sun, Lei, et al.
Publicado: (2014)

The Drosophila prage Gene, Required for Maternal Transcript Destabilization in Embryos, Encodes a Predicted RNA Exonuclease
por: Cui, Jun, et al.
Publicado: (2016)

Estimating genomic breeding values from the QTL-MAS Workshop Data using a single SNP and haplotype/IBD approach
por: Calus, Mario PL, et al.
Publicado: (2009)

eSNPO: An eQTL-based SNP Ontology and SNP functional enrichment analysis platform
por: Li, Jin, et al.
Publicado: (2016)

Pairwise shared genomic segment analysis in high-risk pedigrees: application to Genetic Analysis Workshop 17 exome-sequencing SNP data
por: Cai, Zheng, et al.
Publicado: (2011)

A unified approach for allele frequency estimation, SNP detection and association studies based on pooled sequencing data using EM algorithms
por: Chen, Quan, et al.
Publicado: (2013)

is-rSNP: a novel technique for in silico regulatory SNP detection
por: Macintyre, Geoff, et al.
Publicado: (2010)

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation
por: Piriyapongsa, Jittima, et al.
Publicado: (2009)

Epigenome wide association study of SNP–CpG interactions on changes in triglyceride levels after pharmaceutical intervention: a GAW20 analysis
por: Veenstra, Jenna, et al.
Publicado: (2018)

Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets
por: Lai, Yinglei, et al.
Publicado: (2014)

PAGED: a pathway and gene-set enrichment database to enable molecular phenotype discoveries
por: Huang, Hui, et al.
Publicado: (2012)

Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing
por: Wang, Xi, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_8fki5cs8jramhfiipvs4cqees8