Cargando…

Identification of protein-RNA interaction sites using the information of spatial adjacent residues

BACKGROUND: Protein-RNA interactions play an important role in numbers of fundamental cellular processes such as RNA splicing, transport and translation, protein synthesis and certain RNA-mediated enzymatic processes. The more knowledge of Protein-RNA recognition can not only help to understand the...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chen, Wei, Zhang, Shao-Wu, Cheng, Yong-Mei, Pan, Quan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3289077/ https://www.ncbi.nlm.nih.gov/pubmed/22165911 http://dx.doi.org/10.1186/1477-5956-9-S1-S16

Ejemplares similares

Predicting RNA-binding residues from evolutionary information and sequence conservation
por: Huang, Yu-Feng, et al.
Publicado: (2010)

Investigation and identification of protein γ-glutamyl carboxylation sites
por: Lee, Tzong-Yi, et al.
Publicado: (2011)

Reconstructing genome mixtures from partial adjacencies
por: Mahmoody, Ahmad, et al.
Publicado: (2012)

Exploring the spatial dimension of estrogen and progesterone signaling: detection of nuclear labeling in lobular epithelial cells in normal mammary glands adjacent to breast cancer
por: Grote, Anne, et al.
Publicado: (2014)

Site-specific impacts on gene expression and behavior in fathead minnows (Pimephales promelas) exposed in situ to streams adjacent to sewage treatment plants
por: Garcia-Reyero, Natàlia, et al.
Publicado: (2009)

Sequence and structural features of binding site residues in protein-protein complexes: comparison with protein-nucleic acid complexes
por: Gromiha, M Michael, et al.
Publicado: (2011)

SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites
por: Bui, Van-Minh, et al.
Publicado: (2016)

Identification of epistatic interactions between the human RNA demethylases FTO and ALKBH5 with gene set enrichment analysis informed by differential methylation
por: Piette, Elizabeth R., et al.
Publicado: (2018)

An overlapping module identification method in protein-protein interaction networks
por: Wang, Xuesong, et al.
Publicado: (2012)

A study and benchmark of DNcon: a method for protein residue-residue contact prediction using deep networks
por: Eickholt, Jesse, et al.
Publicado: (2013)

A flexible ancestral genome reconstruction method based on gapped adjacencies
por: Gagnon, Yves, et al.
Publicado: (2012)

Prediction of dinucleotide-specific RNA-binding sites in proteins
por: Fernandez, Michael, et al.
Publicado: (2011)

Generalized adjacency and the conservation of gene clusters in genetic networks defined by synthetic lethals
por: Yang, Zhenyu, et al.
Publicado: (2012)

Using distances between Top-n-gram and residue pairs for protein remote homology detection
por: Liu, Bin, et al.
Publicado: (2014)

A new protein-ligand binding sites prediction method based on the integration of protein sequence conservation information
por: Dai, Tianli, et al.
Publicado: (2011)

LigandRFs: random forest ensemble to identify ligand-binding residues from sequence information alone
por: Chen, Peng, et al.
Publicado: (2014)

Predicting target-ligand interactions using protein ligand-binding site and ligand substructures
por: Wang, Caihua, et al.
Publicado: (2015)

Assessing and predicting protein interactions by combining manifold embedding with multiple information integration
por: Lei, Ying-Ke, et al.
Publicado: (2012)

Splice site identification using probabilistic parameters and SVM classification
por: Baten, AKMA, et al.
Publicado: (2006)

Identification of diagnostic subnetwork markers for cancer in human protein-protein interaction network
por: Su, Junjie, et al.
Publicado: (2010)

Integrating peptides' sequence and energy of contact residues information improves prediction of peptide and HLA-I binding with unknown alleles
por: Luo, Fei, et al.
Publicado: (2013)

Identification of rare variants for hypertension with incorporation of linkage information
por: Chiu, Yen-Feng, et al.
Publicado: (2014)

Incorporating topological information for predicting robust cancer subnetwork markers in human protein-protein interaction network
por: Khunlertgit, Navadon, et al.
Publicado: (2016)

Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles
por: Tsai, Richard Tzong-Han, et al.
Publicado: (2008)

Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities
por: Nguyen, Van-Nui, et al.
Publicado: (2015)

Computing the protein binding sites
por: Guo, Fei, et al.
Publicado: (2012)

Comprehensive prediction of lncRNA–RNA interactions in human transcriptome
por: Terai, Goro, et al.
Publicado: (2016)

Characterising RNA secondary structure space using information entropy
por: Sükösd, Zsuzsanna, et al.
Publicado: (2013)

Identification of gene-gene interaction using principal components
por: Li, Jia, et al.
Publicado: (2009)

Analyzing the simplicial decomposition of spatial protein structures
por: Ördög, Rafael, et al.
Publicado: (2008)

Drug-drug relationship based on target information: application to drug target identification
por: Park, Keunwan, et al.
Publicado: (2011)

Identifying fenofibrate responsive CpG sites
por: Cantor, Rita, et al.
Publicado: (2018)

Identification of human-to-human transmissibility factors in PB2 proteins of influenza A by large-scale mutual information analysis
por: Miotto, Olivo, et al.
Publicado: (2008)

Prediction of heme binding residues from protein sequences with integrative sequence profiles
por: Xiong, Yi, et al.
Publicado: (2012)

Assessing reliability of protein-protein interactions by integrative analysis of data in model organisms
por: Lin, Xiaotong, et al.
Publicado: (2009)

DNA-binding residues and binding mode prediction with binding-mechanism concerned models
por: Huang, Yu-Feng, et al.
Publicado: (2009)

Identification of interactions using model-based multifactor dimensionality reduction
por: Gola, Damian, et al.
Publicado: (2016)

SPIDer: Saccharomyces protein-protein interaction database
por: Wu, Xiaomei, et al.
Publicado: (2006)

ATPsite: sequence-based prediction of ATP-binding residues
por: Chen, Ke, et al.
Publicado: (2011)

Determining modular organization of protein interaction networks by maximizing modularity density
por: Zhang, Shihua, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_5lujtmgd7vtjv3ptmokl06ikh7