Cargando…

Applications of graph theory in protein structure identification

There is a growing interest in the identification of proteins on the proteome wide scale. Among different kinds of protein structure identification methods, graph-theoretic methods are very sharp ones. Due to their lower costs, higher effectiveness and many other advantages, they have drawn more and...

Descripción completa

Detalles Bibliográficos
Autores principales:	Yan, Yan, Zhang, Shenggui, Wu, Fang-Xiang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3289078/ https://www.ncbi.nlm.nih.gov/pubmed/22165974 http://dx.doi.org/10.1186/1477-5956-9-S1-S17

Ejemplares similares

Adjusting protein graphs based on graph entropy
por: Peng, Sheng-Lung, et al.
Publicado: (2014)

A predictive model for secondary RNA structure using graph theory and a neural network
por: Koessler, Denise R, et al.
Publicado: (2010)

Threshold selection in gene co-expression networks using spectral graph theory techniques
por: Perkins, Andy D, et al.
Publicado: (2009)

Protein localization prediction using random walks on graphs
por: Xu, Xiaohua, et al.
Publicado: (2013)

Exploratory analysis of protein translation regulatory networks using hierarchical random graphs
por: Wu, Daniel D, et al.
Publicado: (2010)

Novel implementation of conditional co-regulation by graph theory to derive co-expressed genes from microarray data
por: Rawat, Arun, et al.
Publicado: (2008)

Drug repositioning for non-small cell lung cancer by using machine learning algorithms and topological graph theory
por: Huang, Chien-Hung, et al.
Publicado: (2016)

Novel base triples in RNA structures revealed by graph theoretical searching methods
por: Firdaus-Raih, Mohd, et al.
Publicado: (2011)

Graph ranking for exploratory gene data analysis
por: Gao, Cuilan, et al.
Publicado: (2009)

Comparing biological networks via graph compression
por: Hayashida, Morihiro, et al.
Publicado: (2010)

A graph-theoretic approach for inparalog detection
por: Tremblay-Savard, Olivier, et al.
Publicado: (2012)

Efficient path-based computations on pedigree graphs with compact encodings
por: Yang, Lei, et al.
Publicado: (2012)

Sorting genomes with rearrangements and segmental duplications through trajectory graphs
por: Shao, Mingfu, et al.
Publicado: (2013)

B-cell epitope prediction through a graph model
por: Zhao, Liang, et al.
Publicado: (2012)

Leveraging graph topology and semantic context for pharmacovigilance through twitter-streams
por: Eshleman, Ryan, et al.
Publicado: (2016)

PIGS: improved estimates of identity-by-descent probabilities by probabilistic IBD graph sampling
por: Park, Danny S, et al.
Publicado: (2015)

Identification of protein-RNA interaction sites using the information of spatial adjacent residues
por: Chen, Wei, et al.
Publicado: (2011)

Enumerating tree-like chemical graphs with given upper and lower bounds on path frequencies
por: Shimizu, Masaaki, et al.
Publicado: (2011)

A graph-theoretical approach in brain functional networks. Possible implications in EEG studies
por: Fallani, Fabrizio De Vico, et al.
Publicado: (2010)

An overlapping module identification method in protein-protein interaction networks
por: Wang, Xuesong, et al.
Publicado: (2012)

Identity-by-descent graphs offer a flexible framework for imputation and both linkage and association analyses
por: Blue, Elizabeth Marchani, et al.
Publicado: (2014)

A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites
por: Xie, Lei, et al.
Publicado: (2007)

Identification of functional modules based on transcriptional regulation structure
por: Birmelé, Etienne, et al.
Publicado: (2008)

A molecular structure matching approach to efficient identification of endogenous mammalian biochemical structures
por: Hamdalla, Mai A, et al.
Publicado: (2015)

Identifying essential proteins from active PPI networks constructed with dynamic gene expression
por: Xiao, Qianghua, et al.
Publicado: (2015)

Identification of diagnostic subnetwork markers for cancer in human protein-protein interaction network
por: Su, Junjie, et al.
Publicado: (2010)

Structural properties of the reconciliation space and their applications in enumerating nearly-optimal reconciliations between a gene tree and a species tree
por: Wu, Taoyang, et al.
Publicado: (2011)

Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium
por: Foroni, Elena, et al.
Publicado: (2011)

Investigation and identification of protein γ-glutamyl carboxylation sites
por: Lee, Tzong-Yi, et al.
Publicado: (2011)

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins
por: Cho, Young-Rae, et al.
Publicado: (2010)

In Silico identification of M. TB proteins with diagnostic potential
por: Calero, Romel, et al.
Publicado: (2013)

Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles
por: Tsai, Richard Tzong-Han, et al.
Publicado: (2008)

A coherent graph-based semantic clustering and summarization approach for biomedical literature and a new summarization evaluation method
por: Yoo, Illhoi, et al.
Publicado: (2007)

Projections for fast protein structure retrieval
por: Bhattacharya, Sourangshu, et al.
Publicado: (2006)

Drug-drug relationship based on target information: application to drug target identification
por: Park, Keunwan, et al.
Publicado: (2011)

Protein structure prediction with local adjust tabu search algorithm
por: Lin, Xiaoli, et al.
Publicado: (2014)

Applications of graph theory /
Publicado: (1979)

Graph theory with applications
por: Vasudev, C
Publicado: (2006)

Graphs Theory and Applications
por: Fournier, Jean-Claude
Publicado: (2008)

Graph theory applications
por: Foulds, L R
Publicado: (1992)

Cannot write session to /tmp/vufind_sessions/sess_aifamjd0me120g0kltouvbbdn0