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Dysmorphometrics: the modelling of morphological abnormalities
BACKGROUND: The study of typical morphological variations using quantitative, morphometric descriptors has always interested biologists in general. However, unusual examples of form, such as abnormalities are often encountered in biomedical sciences. Despite the long history of morphometrics, the me...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3297492/ https://www.ncbi.nlm.nih.gov/pubmed/22309623 http://dx.doi.org/10.1186/1742-4682-9-5 |
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author | Claes, Peter Daniels, Katleen Walters, Mark Clement, John Vandermeulen, Dirk Suetens, Paul |
author_facet | Claes, Peter Daniels, Katleen Walters, Mark Clement, John Vandermeulen, Dirk Suetens, Paul |
author_sort | Claes, Peter |
collection | PubMed |
description | BACKGROUND: The study of typical morphological variations using quantitative, morphometric descriptors has always interested biologists in general. However, unusual examples of form, such as abnormalities are often encountered in biomedical sciences. Despite the long history of morphometrics, the means to identify and quantify such unusual form differences remains limited. METHODS: A theoretical concept, called dysmorphometrics, is introduced augmenting current geometric morphometrics with a focus on identifying and modelling form abnormalities. Dysmorphometrics applies the paradigm of detecting form differences as outliers compared to an appropriate norm. To achieve this, the likelihood formulation of landmark superimpositions is extended with outlier processes explicitly introducing a latent variable coding for abnormalities. A tractable solution to this augmented superimposition problem is obtained using Expectation-Maximization. The topography of detected abnormalities is encoded in a dysmorphogram. RESULTS: We demonstrate the use of dysmorphometrics to measure abrupt changes in time, asymmetry and discordancy in a set of human faces presenting with facial abnormalities. CONCLUSION: The results clearly illustrate the unique power to reveal unusual form differences given only normative data with clear applications in both biomedical practice & research. |
format | Online Article Text |
id | pubmed-3297492 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-32974922012-03-09 Dysmorphometrics: the modelling of morphological abnormalities Claes, Peter Daniels, Katleen Walters, Mark Clement, John Vandermeulen, Dirk Suetens, Paul Theor Biol Med Model Research BACKGROUND: The study of typical morphological variations using quantitative, morphometric descriptors has always interested biologists in general. However, unusual examples of form, such as abnormalities are often encountered in biomedical sciences. Despite the long history of morphometrics, the means to identify and quantify such unusual form differences remains limited. METHODS: A theoretical concept, called dysmorphometrics, is introduced augmenting current geometric morphometrics with a focus on identifying and modelling form abnormalities. Dysmorphometrics applies the paradigm of detecting form differences as outliers compared to an appropriate norm. To achieve this, the likelihood formulation of landmark superimpositions is extended with outlier processes explicitly introducing a latent variable coding for abnormalities. A tractable solution to this augmented superimposition problem is obtained using Expectation-Maximization. The topography of detected abnormalities is encoded in a dysmorphogram. RESULTS: We demonstrate the use of dysmorphometrics to measure abrupt changes in time, asymmetry and discordancy in a set of human faces presenting with facial abnormalities. CONCLUSION: The results clearly illustrate the unique power to reveal unusual form differences given only normative data with clear applications in both biomedical practice & research. BioMed Central 2012-02-06 /pmc/articles/PMC3297492/ /pubmed/22309623 http://dx.doi.org/10.1186/1742-4682-9-5 Text en Copyright ©2012 Claes et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Claes, Peter Daniels, Katleen Walters, Mark Clement, John Vandermeulen, Dirk Suetens, Paul Dysmorphometrics: the modelling of morphological abnormalities |
title | Dysmorphometrics: the modelling of morphological abnormalities |
title_full | Dysmorphometrics: the modelling of morphological abnormalities |
title_fullStr | Dysmorphometrics: the modelling of morphological abnormalities |
title_full_unstemmed | Dysmorphometrics: the modelling of morphological abnormalities |
title_short | Dysmorphometrics: the modelling of morphological abnormalities |
title_sort | dysmorphometrics: the modelling of morphological abnormalities |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3297492/ https://www.ncbi.nlm.nih.gov/pubmed/22309623 http://dx.doi.org/10.1186/1742-4682-9-5 |
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