Cargando…

SNP markers retrieval for a non-model species: a practical approach

BACKGROUND: SNP (Single Nucleotide Polymorphism) markers are rapidly becoming the markers of choice for applications in breeding because of next generation sequencing technology developments. For SNP development by NGS technologies, correct assembly of the huge amounts of sequence data generated is...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shahin, Arwa, van Gurp, Thomas, Peters, Sander A, Visser, Richard GF, van Tuyl, Jaap M, Arens, Paul
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3298514/ https://www.ncbi.nlm.nih.gov/pubmed/22284269 http://dx.doi.org/10.1186/1756-0500-5-79

Ejemplares similares

Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa
por: Shahin, Arwa, et al.
Publicado: (2012)

Using multi-locus allelic sequence data to estimate genetic divergence among four Lilium (Liliaceae) cultivars
por: Shahin, Arwa, et al.
Publicado: (2014)

The use of a candidate gene approach to study Botrytis cinerea resistance in Gerbera hybrida
por: Fu, Yiqian, et al.
Publicado: (2023)

Genetic mapping of resistance to Fusarium oxysporum f. sp. tulipae in tulip
por: Tang, Nan, et al.
Publicado: (2015)

SNP-markers in Allium species to facilitate introgression breeding in onion
por: Scholten, Olga E., et al.
Publicado: (2016)

Genetic mapping and QTL analysis of Botrytis resistance in Gerbera hybrida
por: Fu, Yiqian, et al.
Publicado: (2017)

Conclusive evidence for hexasomic inheritance in chrysanthemum based on analysis of a 183 k SNP array
por: van Geest, Geert, et al.
Publicado: (2017)

Transcriptome Analysis of Gerbera hybrida Including in silico Confirmation of Defense Genes Found
por: Fu, Yiqian, et al.
Publicado: (2016)

High-density SNP-based genetic maps for the parents of an outcrossed and a selfed tetraploid garden rose cross, inferred from admixed progeny using the 68k rose SNP array
por: Vukosavljev, Mirjana, et al.
Publicado: (2016)

SNP-Flankplus: SNP ID-centric retrieval for SNP flanking sequences
por: Yang, Cheng-Hong, et al.
Publicado: (2008)

Integrating haplotype-specific linkage maps in tetraploid species using SNP markers
por: Bourke, Peter M., et al.
Publicado: (2016)

Tomato breeding in the genomics era: insights from a SNP array
por: Víquez-Zamora, Marcela, et al.
Publicado: (2013)

New diagnostic SNP molecular markers for the Mytilus species complex
por: Wilson, Joanna, et al.
Publicado: (2018)

NABIC SNP: an integrated database for SNP markers
por: Kim, Chang-Kug, et al.
Publicado: (2015)

Safe transfer and retrieval: the practical approach
por: Moine, Pierre
Publicado: (2004)

Chloroplast SNP-marker as powerful tool for differentiation of Populus species in reliable poplar breeding and barcoding approaches
por: Schroeder, Hilke, et al.
Publicado: (2011)

Development of a 135K SNP genotyping array for Actinidia arguta and its applications for genetic mapping and QTL analysis in kiwifruit
por: Wang, Ran, et al.
Publicado: (2022)

Distinct Profiles of 50 kHz Vocalizations Differentiate Between Social Versus Non-social Reward Approach and Consumption
por: Seidisarouei, Mohammad, et al.
Publicado: (2021)

Species-informative SNP markers for characterising freshwater prawns of genus Macrobrachium in Cameroon
por: Makombu, Judith G., et al.
Publicado: (2022)

MDM2 SNP309 and SNP285 Act as Negative Prognostic Markers for Non-small Cell Lung Cancer Adenocarcinoma Patients
por: Deben, Christophe, et al.
Publicado: (2017)

Development of species diagnostic SNP markers for quality control genotyping in four rice (Oryza L.) species
por: Ndjiondjop, Marie Noelle, et al.
Publicado: (2018)

msGBS: A new high‐throughput approach to quantify the relative species abundance in root samples of multispecies plant communities
por: Wagemaker, Cornelis A. M., et al.
Publicado: (2020)

polymapR—linkage analysis and genetic map construction from F(1) populations of outcrossing polyploids
por: Bourke, Peter M, et al.
Publicado: (2018)

polymapR—linkage analysis and genetic map construction from F(1) populations of outcrossing polyploids
por: Bourke, Peter M, et al.
Publicado: (2019)

Distribution of P1(D1) wart disease resistance in potato germplasm and GWAS identification of haplotype-specific SNP markers
por: Prodhomme, Charlotte, et al.
Publicado: (2020)

ASSIsT: an automatic SNP scoring tool for in- and outbreeding species
por: Di Guardo, Mario, et al.
Publicado: (2015)

Differences in insect resistance between tomato species endemic to the Galapagos Islands
por: Lucatti, Alejandro F, et al.
Publicado: (2013)

SNP Markers and Their Impact on Plant Breeding
por: Mammadov, Jafar, et al.
Publicado: (2012)

Use of E-Health in Dutch General Practice during the COVID-19 Pandemic
por: Keuper, Jelle, et al.
Publicado: (2021)

Single Nucleotide Polymorphism (SNP) markers associated with high folate content in wild potato species
por: Bali, Sapinder, et al.
Publicado: (2018)

General Practices’ Experiences With Patients’ Web-Based Access to Medical Records: Survey Study
por: Keuper, Jelle, et al.
Publicado: (2023)

SNP4OrphanSpecies: A bioinformatics pipeline to isolate molecular markers for studying genetic diversity of orphan species
por: Penaud, Benjamin, et al.
Publicado: (2022)

Data mining to retrieve smoking status from electronic health records in general practice( )
por: de Boer, Annemarijn R, et al.
Publicado: (2022)

Evaluation of approaches for identifying population informative markers from high density SNP Chips
por: Wilkinson, Samantha, et al.
Publicado: (2011)

SNP Marker Discovery in Koala TLR Genes
por: Cui, Jian, et al.
Publicado: (2015)

Use of Microsatellite and SNP Markers for Biotype Characterization in Hessian Fly
por: Schemerhorn, Brandon J., et al.
Publicado: (2015)

Vicarious reward unblocks associative learning about novel cues in male rats
por: van Gurp, Sander, et al.
Publicado: (2020)

Comparative analysis of microsatellite, SNP, and InDel markers in four Rhododendron species based on RNA-seq
por: Wang, Shuzhen, et al.
Publicado: (2018)

Investigation of genetic relationships within three Miscanthus species using SNP markers identified with SLAF-seq
por: Chen, Zhiyong, et al.
Publicado: (2022)

Decision Theory-Based COI-SNP Tagging Approach for 126 Scombriformes Species Tagging
por: Yang, Cheng-Hong, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_v86vkpaderda2obni2n6v45rik