Cargando…

GIST: Genomic island suite of tools for predicting genomic islands in genomic sequences

Genomic Islands (GIs) are genomic regions that are originally from other organisms, through a process known as Horizontal Gene Transfer (HGT). Detection of GIs plays a significant role in biomedical research since such align genomic regions usually contain important features, such as pathogenic gene...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hasan, Mohammad Shabbir, Liu, Qi, Wang, Han, Fazekas, John, Chen, Bernard, Che, Dongsheng
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Biomedical Informatics 2012
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3302003/ https://www.ncbi.nlm.nih.gov/pubmed/22419842 http://dx.doi.org/10.6026/97320630008203

Ejemplares similares

GIV: A Tool for Genomic Islands Visualization
por: Che, Dongsheng, et al.
Publicado: (2013)

EGID: an ensemble algorithm for improved genomic island detection in genomic sequences
por: Che, Dongsheng, et al.
Publicado: (2011)

Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models
por: Waack, Stephan, et al.
Publicado: (2006)

Mabs, a suite of tools for gene-informed genome assembly
por: Schelkunov, Mikhail I.
Publicado: (2023)

getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories
por: Moco, Vincent, et al.
Publicado: (2022)

EuGI: a novel resource for studying genomic islands to facilitate horizontal gene transfer detection in eukaryotes
por: Clasen, Frederick Johannes, et al.
Publicado: (2018)

Identifying Pathogenicity Islands in Bacterial Pathogenomics Using Computational Approaches
por: Che, Dongsheng, et al.
Publicado: (2014)

xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria
por: Bush, Eliot C., et al.
Publicado: (2018)

SLMSuite: a suite of algorithms for segmenting genomic profiles
por: Orlandini, Valerio, et al.
Publicado: (2017)

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
por: Treangen, Todd J, et al.
Publicado: (2014)

Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data
por: Greenwald, William W., et al.
Publicado: (2017)

IGIPT - Integrated genomic island prediction tool
por: Jain, Ruchi, et al.
Publicado: (2011)

Comparative Analysis of Genomic Island Prediction Tools
por: da Silva Filho, Antonio Camilo, et al.
Publicado: (2018)

Sequence Maneuverer: tool for sequence extraction from genomes
por: Yasmin, Tayyaba, et al.
Publicado: (2012)

SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation
por: Anderson, Catherine L, et al.
Publicado: (2011)

A Computational Framework for Tracing the Origins of Genomic Islands in Prokaryotes
por: Wan, Peng, et al.
Publicado: (2014)

SequelTools: a suite of tools for working with PacBio Sequel raw sequence data
por: Hufnagel, David E., et al.
Publicado: (2020)

ILIAD: a suite of automated Snakemake workflows for processing genomic data for downstream applications
por: Herrick, Noah, et al.
Publicado: (2023)

INSaFLU: an automated open web-based bioinformatics suite “from-reads” for influenza whole-genome-sequencing-based surveillance
por: Borges, Vítor, et al.
Publicado: (2018)

Improved genomic island predictions with IslandPath-DIMOB
por: Bertelli, Claire, et al.
Publicado: (2018)

The Personal Sequence Database: a suite of tools to create and maintain web-accessible sequence databases
por: Givan, Scott A, et al.
Publicado: (2007)

GSAlign: an efficient sequence alignment tool for intra-species genomes
por: Lin, Hsin-Nan, et al.
Publicado: (2020)

Classification of genomic islands using decision trees and their ensemble algorithms
por: Che, Dongsheng, et al.
Publicado: (2010)

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions
por: Laing, Chad, et al.
Publicado: (2010)

OmniMapFree: A unified tool to visualise and explore sequenced genomes
por: Antoniw, John, et al.
Publicado: (2011)

SECIMTools: a suite of metabolomics data analysis tools
por: Kirpich, Alexander S., et al.
Publicado: (2018)

The Genomic HyperBrowser: inferential genomics at the sequence level
por: Sandve, Geir K, et al.
Publicado: (2010)

Computational methods for predicting genomic islands in microbial genomes
por: Lu, Bingxin, et al.
Publicado: (2016)

GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
por: Manchanda, Nancy, et al.
Publicado: (2020)

PrimerSNP: a web tool for whole-genome selection of allele-specific and common primers of phylogenetically-related bacterial genomic sequences
por: Yao, Jiqiang, et al.
Publicado: (2008)

PSAT: A web tool to compare genomic neighborhoods of multiple prokaryotic genomes
por: Fong, Christine, et al.
Publicado: (2008)

Skittle: A 2-Dimensional Genome Visualization Tool
por: Seaman, Josiah D, et al.
Publicado: (2009)

Genomic Islands in Mycoplasmas
por: Citti, Christine, et al.
Publicado: (2020)

G-IMEx: A comprehensive software tool for detection of microsatellites from genome sequences
por: Mudunuri, Suresh B, et al.
Publicado: (2010)

GSIT: An integrated web-tool for identification of genomic signatures in highly similar DNA sequences
por: Tuteja, Amit, et al.
Publicado: (2014)

SeqBreed: a python tool to evaluate genomic prediction in complex scenarios
por: Pérez-Enciso, Miguel, et al.
Publicado: (2020)

Genofunc: genome annotation and identification of genome features for automated pipelining analysis of virus whole genome sequences
por: Yu, Xiaoyu
Publicado: (2023)

PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
por: Chiu, Kuo Ping, et al.
Publicado: (2006)

The Genome Reverse Compiler: an explorative annotation tool
por: Warren, Andrew S, et al.
Publicado: (2009)

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
por: Bertelli, Claire, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_keg3ae7dqrt8jsjo7bvdppt7u9