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CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape based on sum-of-weights scores
Summary: CytoSaddleSum provides Cytoscape users with access to the functionality of SaddleSum, a functional enrichment tool based on sum-of-weight scores. It operates by querying SaddleSum locally (using the standalone version) or remotely (through an HTTP request to a web server). The functional en...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3307116/ https://www.ncbi.nlm.nih.gov/pubmed/22345616 http://dx.doi.org/10.1093/bioinformatics/bts041 |
Sumario: | Summary: CytoSaddleSum provides Cytoscape users with access to the functionality of SaddleSum, a functional enrichment tool based on sum-of-weight scores. It operates by querying SaddleSum locally (using the standalone version) or remotely (through an HTTP request to a web server). The functional enrichment results are shown as a term relationship network, where nodes represent terms and edges show term relationships. Furthermore, query results are written as Cytoscape attributes allowing easy saving, retrieval and integration into network-based data analysis workflows. Availability: www.ncbi.nlm.nih.gov/CBBresearch/Yu/downloads.html The source code is placed in Public Domain. Contact: yyu@ncbi.nlm.nih.gov Supplementary information: Supplementary materials are available at Bioinformatics online. |
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