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RNA-Seq and find: entering the RNA deep field
Initial high-throughput RNA sequencing (RNA-Seq) experiments have revealed a complex and dynamic transcriptome, but because it samples transcripts in proportion to their abundances, assessing the extent and nature of low-level transcription using this technique has been difficult. A new assay, RNA C...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308029/ https://www.ncbi.nlm.nih.gov/pubmed/22113004 http://dx.doi.org/10.1186/gm290 |
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author | Roberts, Adam Pachter, Lior |
author_facet | Roberts, Adam Pachter, Lior |
author_sort | Roberts, Adam |
collection | PubMed |
description | Initial high-throughput RNA sequencing (RNA-Seq) experiments have revealed a complex and dynamic transcriptome, but because it samples transcripts in proportion to their abundances, assessing the extent and nature of low-level transcription using this technique has been difficult. A new assay, RNA CaptureSeq, addresses this limitation of RNA-Seq by enriching for low-level transcripts with cDNA tiling arrays prior to high-throughput sequencing. This approach reveals a plethora of transcripts that have been previously dismissed as 'noise', and hints at single-cell transcription fingerprints that may be crucial in defining cellular function in normal and disease states. |
format | Online Article Text |
id | pubmed-3308029 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-33080292012-03-21 RNA-Seq and find: entering the RNA deep field Roberts, Adam Pachter, Lior Genome Med Research Highlight Initial high-throughput RNA sequencing (RNA-Seq) experiments have revealed a complex and dynamic transcriptome, but because it samples transcripts in proportion to their abundances, assessing the extent and nature of low-level transcription using this technique has been difficult. A new assay, RNA CaptureSeq, addresses this limitation of RNA-Seq by enriching for low-level transcripts with cDNA tiling arrays prior to high-throughput sequencing. This approach reveals a plethora of transcripts that have been previously dismissed as 'noise', and hints at single-cell transcription fingerprints that may be crucial in defining cellular function in normal and disease states. BioMed Central 2011-11-22 /pmc/articles/PMC3308029/ /pubmed/22113004 http://dx.doi.org/10.1186/gm290 Text en Copyright ©2011 BioMed Central Ltd. |
spellingShingle | Research Highlight Roberts, Adam Pachter, Lior RNA-Seq and find: entering the RNA deep field |
title | RNA-Seq and find: entering the RNA deep field |
title_full | RNA-Seq and find: entering the RNA deep field |
title_fullStr | RNA-Seq and find: entering the RNA deep field |
title_full_unstemmed | RNA-Seq and find: entering the RNA deep field |
title_short | RNA-Seq and find: entering the RNA deep field |
title_sort | rna-seq and find: entering the rna deep field |
topic | Research Highlight |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308029/ https://www.ncbi.nlm.nih.gov/pubmed/22113004 http://dx.doi.org/10.1186/gm290 |
work_keys_str_mv | AT robertsadam rnaseqandfindenteringthernadeepfield AT pachterlior rnaseqandfindenteringthernadeepfield |