PRIDE: Quality control in a proteomics data repository

The PRoteomics IDEntifications (PRIDE) database is a large public proteomics data repository, containing over 270 million mass spectra (by November 2011). PRIDE is an archival database, providing the proteomics data supporting specific scientific publications in a computationally accessible manner....

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Detalles Bibliográficos
Autores principales: Csordas, Attila, Ovelleiro, David, Wang, Rui, Foster, Joseph M., Ríos, Daniel, Vizcaíno, Juan Antonio, Hermjakob, Henning
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Original Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308160/
https://www.ncbi.nlm.nih.gov/pubmed/22434838
http://dx.doi.org/10.1093/database/bas004
Descripción
Sumario:The PRoteomics IDEntifications (PRIDE) database is a large public proteomics data repository, containing over 270 million mass spectra (by November 2011). PRIDE is an archival database, providing the proteomics data supporting specific scientific publications in a computationally accessible manner. While PRIDE faces rapid increases in data deposition size as well as number of depositions, the major challenge is to ensure a high quality of data depositions in the context of highly diverse proteomics work flows and data representations. Here, we describe the PRIDE curation pipeline and its practical application in quality control of complex data depositions. Database URL: http://www.ebi.ac.uk/pride/.

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