PRIDE: Quality control in a proteomics data repository

The PRoteomics IDEntifications (PRIDE) database is a large public proteomics data repository, containing over 270 million mass spectra (by November 2011). PRIDE is an archival database, providing the proteomics data supporting specific scientific publications in a computationally accessible manner....

Descripción completa

Detalles Bibliográficos
Autores principales: Csordas, Attila, Ovelleiro, David, Wang, Rui, Foster, Joseph M., Ríos, Daniel, Vizcaíno, Juan Antonio, Hermjakob, Henning
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Original Articles
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308160/
https://www.ncbi.nlm.nih.gov/pubmed/22434838
http://dx.doi.org/10.1093/database/bas004
_version_ 1782227405053624320
author Csordas, Attila
Ovelleiro, David
Wang, Rui
Foster, Joseph M.
Ríos, Daniel
Vizcaíno, Juan Antonio
Hermjakob, Henning
author_facet Csordas, Attila
Ovelleiro, David
Wang, Rui
Foster, Joseph M.
Ríos, Daniel
Vizcaíno, Juan Antonio
Hermjakob, Henning
author_sort Csordas, Attila
collection PubMed
description The PRoteomics IDEntifications (PRIDE) database is a large public proteomics data repository, containing over 270 million mass spectra (by November 2011). PRIDE is an archival database, providing the proteomics data supporting specific scientific publications in a computationally accessible manner. While PRIDE faces rapid increases in data deposition size as well as number of depositions, the major challenge is to ensure a high quality of data depositions in the context of highly diverse proteomics work flows and data representations. Here, we describe the PRIDE curation pipeline and its practical application in quality control of complex data depositions. Database URL: http://www.ebi.ac.uk/pride/.
format Online
Article
Text
id pubmed-3308160
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-33081602012-03-20 PRIDE: Quality control in a proteomics data repository Csordas, Attila Ovelleiro, David Wang, Rui Foster, Joseph M. Ríos, Daniel Vizcaíno, Juan Antonio Hermjakob, Henning Database (Oxford) Original Articles The PRoteomics IDEntifications (PRIDE) database is a large public proteomics data repository, containing over 270 million mass spectra (by November 2011). PRIDE is an archival database, providing the proteomics data supporting specific scientific publications in a computationally accessible manner. While PRIDE faces rapid increases in data deposition size as well as number of depositions, the major challenge is to ensure a high quality of data depositions in the context of highly diverse proteomics work flows and data representations. Here, we describe the PRIDE curation pipeline and its practical application in quality control of complex data depositions. Database URL: http://www.ebi.ac.uk/pride/. Oxford University Press 2012-02-13 /pmc/articles/PMC3308160/ /pubmed/22434838 http://dx.doi.org/10.1093/database/bas004 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Csordas, Attila
Ovelleiro, David
Wang, Rui
Foster, Joseph M.
Ríos, Daniel
Vizcaíno, Juan Antonio
Hermjakob, Henning
PRIDE: Quality control in a proteomics data repository
title PRIDE: Quality control in a proteomics data repository
title_full PRIDE: Quality control in a proteomics data repository
title_fullStr PRIDE: Quality control in a proteomics data repository
title_full_unstemmed PRIDE: Quality control in a proteomics data repository
title_short PRIDE: Quality control in a proteomics data repository
title_sort pride: quality control in a proteomics data repository
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308160/
https://www.ncbi.nlm.nih.gov/pubmed/22434838
http://dx.doi.org/10.1093/database/bas004
work_keys_str_mv AT csordasattila pridequalitycontrolinaproteomicsdatarepository
AT ovelleirodavid pridequalitycontrolinaproteomicsdatarepository
AT wangrui pridequalitycontrolinaproteomicsdatarepository
AT fosterjosephm pridequalitycontrolinaproteomicsdatarepository
AT riosdaniel pridequalitycontrolinaproteomicsdatarepository
AT vizcainojuanantonio pridequalitycontrolinaproteomicsdatarepository
AT hermjakobhenning pridequalitycontrolinaproteomicsdatarepository

Ejemplares similares