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Tetrahymena genome database Wiki: a community-maintained model organism database

When funding for Tetrahymena Genome Database (TGD) ended in 2006, no further updates were made to this important community resource and the main database was taken offline in 2008. We have restored and updated this important resource for use by the Tetrahymena research community. We have also retool...

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Detalles Bibliográficos
Autores principales: Stover, Nicholas A., Punia, Ravinder S., Bowen, Michael S., Dolins, Steven B., Clark, Theodore G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308163/
https://www.ncbi.nlm.nih.gov/pubmed/22434841
http://dx.doi.org/10.1093/database/bas007
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author Stover, Nicholas A.
Punia, Ravinder S.
Bowen, Michael S.
Dolins, Steven B.
Clark, Theodore G.
author_facet Stover, Nicholas A.
Punia, Ravinder S.
Bowen, Michael S.
Dolins, Steven B.
Clark, Theodore G.
author_sort Stover, Nicholas A.
collection PubMed
description When funding for Tetrahymena Genome Database (TGD) ended in 2006, no further updates were made to this important community resource and the main database was taken offline in 2008. We have restored and updated this important resource for use by the Tetrahymena research community. We have also retooled the TGD website (now TGD Wiki) to allow members of the community to directly update the information presented for each gene, including gene names, descriptions and Gene Ontology annotations, from a web browser. Maintenance of genome annotations by the authors generating and publishing primary data, rather than dedicated scientific curators, is a viable alternative for the upkeep of genomes, particularly for organisms with smaller research communities. By combining simple, intuitive displays with the powerful search functions made possible by its underlying relational database, TGD Wiki has been designed to maximize participation by bench scientists in the development of their community bioinformatics resource. Database URL: http://ciliate.org
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spelling pubmed-33081632012-03-20 Tetrahymena genome database Wiki: a community-maintained model organism database Stover, Nicholas A. Punia, Ravinder S. Bowen, Michael S. Dolins, Steven B. Clark, Theodore G. Database (Oxford) Original Articles When funding for Tetrahymena Genome Database (TGD) ended in 2006, no further updates were made to this important community resource and the main database was taken offline in 2008. We have restored and updated this important resource for use by the Tetrahymena research community. We have also retooled the TGD website (now TGD Wiki) to allow members of the community to directly update the information presented for each gene, including gene names, descriptions and Gene Ontology annotations, from a web browser. Maintenance of genome annotations by the authors generating and publishing primary data, rather than dedicated scientific curators, is a viable alternative for the upkeep of genomes, particularly for organisms with smaller research communities. By combining simple, intuitive displays with the powerful search functions made possible by its underlying relational database, TGD Wiki has been designed to maximize participation by bench scientists in the development of their community bioinformatics resource. Database URL: http://ciliate.org Oxford University Press 2012-02-13 /pmc/articles/PMC3308163/ /pubmed/22434841 http://dx.doi.org/10.1093/database/bas007 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Stover, Nicholas A.
Punia, Ravinder S.
Bowen, Michael S.
Dolins, Steven B.
Clark, Theodore G.
Tetrahymena genome database Wiki: a community-maintained model organism database
title Tetrahymena genome database Wiki: a community-maintained model organism database
title_full Tetrahymena genome database Wiki: a community-maintained model organism database
title_fullStr Tetrahymena genome database Wiki: a community-maintained model organism database
title_full_unstemmed Tetrahymena genome database Wiki: a community-maintained model organism database
title_short Tetrahymena genome database Wiki: a community-maintained model organism database
title_sort tetrahymena genome database wiki: a community-maintained model organism database
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308163/
https://www.ncbi.nlm.nih.gov/pubmed/22434841
http://dx.doi.org/10.1093/database/bas007
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