Cargando…

Comparative analysis and visualization of multiple collinear genomes

BACKGROUND: Genome browsers are a common tool used by biologists to visualize genomic features including genes, polymorphisms, and many others. However, existing genome browsers and visualization tools are not well-suited to perform meaningful comparative analysis among a large number of genomes. Wi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Jeremy R, de Villena, Fernando Pardo-Manuel, McMillan, Leonard
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3311102/ https://www.ncbi.nlm.nih.gov/pubmed/22536897 http://dx.doi.org/10.1186/1471-2105-13-S3-S13

Ejemplares similares

Efficient genome ancestry inference in complex pedigrees with inbreeding
por: Liu, Eric Yi, et al.
Publicado: (2010)

The polymorphism architecture of mouse genetic resources elucidated using genome-wide resequencing data: implications for QTL discovery and systems genetics
por: Roberts, Adam, et al.
Publicado: (2007)

GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference owing to RNA-seq reads misalignment
por: Zhang, Zhaojun, et al.
Publicado: (2013)

Exploratory visual analysis of conserved domains on multiple sequence alignments
por: Jankun-Kelly, TJ, et al.
Publicado: (2009)

CAMBer: an approach to support comparative analysis of multiple bacterial strains
por: Wozniak, Michal, et al.
Publicado: (2011)

Genome-wide association study for multiple phenotype analysis
por: Deng, Xuan, et al.
Publicado: (2018)

Genovar: a detection and visualization tool for genomic variants
por: Jung, Kwang Su, et al.
Publicado: (2012)

Genetic Architecture of Skewed X Inactivation in the Laboratory Mouse
por: Calaway, John D., et al.
Publicado: (2013)

Whole Genome Sequence of Two Wild-Derived Mus musculus domesticus Inbred Strains, LEWES/EiJ and ZALENDE/EiJ, with Different Diploid Numbers
por: Morgan, Andrew P., et al.
Publicado: (2016)

Comparative genome analysis of lignin biosynthesis gene families across the plant kingdom
por: Xu, Zhanyou, et al.
Publicado: (2009)

Genome-wide analysis in multiple-case families: assessing the relationship between triglyceride and methylation
por: Fuady, Angga M., et al.
Publicado: (2018)

A comparative analysis of family-based and population-based association tests using whole genome sequence data
por: Zhou, Jin J, et al.
Publicado: (2014)

Linkage analysis of alcoholism-related electrophysiological phenotypes: genome scans with microsatellites compared to single-nucleotide polymorphisms
por: Bautista, Jocelyn F, et al.
Publicado: (2005)

Gene family assignment-free comparative genomics
por: Doerr, Daniel, et al.
Publicado: (2012)

Databases of homologous gene families for comparative genomics
por: Penel, Simon, et al.
Publicado: (2009)

Comparative genomic analysis of NAC transcriptional factors to dissect the regulatory mechanisms for cell wall biosynthesis
por: Yao, Dongxia, et al.
Publicado: (2012)

Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome
por: Christoffels, Alan, et al.
Publicado: (2006)

Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias
por: Didion, John P, et al.
Publicado: (2012)

Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts
por: Forde, Brian M, et al.
Publicado: (2011)

Comparative genome analysis of PHB gene family reveals deep evolutionary origins and diverse gene function
por: Di, Chao, et al.
Publicado: (2010)

Comparative analysis of different approaches for dealing with candidate regions in the context of a genome-wide association study
por: Lantieri, Francesca, et al.
Publicado: (2009)

XVI(th )QTLMAS: simulated dataset and comparative analysis of submitted results for QTL mapping and genomic evaluation
por: Usai, M Graziano, et al.
Publicado: (2014)

Rats and humans differ in processing collinear visual features
por: Meier, Philip M., et al.
Publicado: (2013)

Collinear Motion Strengthens Local Context in Visual Detection
por: Girelli, Massimo
Publicado: (2020)

Multiple genome comparison based on overlap regions of pairwise local alignments
por: Jahn, Katharina, et al.
Publicado: (2012)

Multiple genome-wide analyses of smoking behavior in the Framingham Heart Study
por: Goode, Ellen L, et al.
Publicado: (2003)

Origin of multiple periodicities in the Fourier power spectra of the Plasmodium falciparum genome
por: Nunes, Miriam CS, et al.
Publicado: (2011)

Identification of conserved gene clusters in multiple genomes based on synteny and homology
por: Sarkar, Anasua, et al.
Publicado: (2011)

IView: introgression library visualization and query tool
por: Bottoms, Christopher A, et al.
Publicado: (2010)

A comparative structural bioinformatics analysis of inherited mutations in β-D-Mannosidase across multiple species reveals a genotype-phenotype correlation
por: Huynh, Thi, et al.
Publicado: (2011)

A two-step multiple-marker strategy for genome-wide association studies
por: Aschard, Hugues, et al.
Publicado: (2007)

Collinear facilitation and contour integration in autism: evidence for atypical visual integration
por: Jachim, Stephen, et al.
Publicado: (2015)

Coping with family structure in genome-wide association studies: a comparative evaluation
por: Hsu, Yayun, et al.
Publicado: (2018)

Integrating multiple genomic data: sparse representation based biomarker selection for blood pressure
por: Cao, Hongbao, et al.
Publicado: (2016)

Genome scan linkage analysis comparing microsatellites and single-nucleotide polymorphisms markers for two measures of alcoholism in chromosomes 1, 4, and 7
por: Chen, Guanjie, et al.
Publicado: (2005)

Whole genome analysis of infectious bovine keratoconjunctivitis in Angus cattle using Bayesian threshold models
por: Kizilkaya, Kadir, et al.
Publicado: (2011)

Evaluation of a genome-wide approach to multiple marker association considering different marker densities
por: Cleveland, Matthew A, et al.
Publicado: (2009)

Status and access to the Collaborative Cross population
por: Welsh, Catherine E., et al.
Publicado: (2012)

Erratum to: Status and access to the Collaborative Cross population
por: Welsh, Catherine E., et al.
Publicado: (2014)

Genetic Analysis Workshop 15: gene expression analysis and approaches to detecting multiple functional loci
por: Cordell, Heather J, et al.
Publicado: (2007)

Cannot write session to /tmp/vufind_sessions/sess_abacavrl3d8udn4i9qh02jp0cr