Cargando…

Multi-field-of-view strategy for image-based outcome prediction of multi-parametric estrogen receptor-positive breast cancer histopathology: Comparison to Oncotype DX

In this paper, we attempt to quantify the prognostic information embedded in multi-parametric histologic biopsy images to predict disease aggressiveness in estrogen receptor-positive (ER+) breast cancers (BCa). The novel methodological contribution is in the use of a multi-field-of-view (multi-FOV)...

Descripción completa

Detalles Bibliográficos
Autores principales: Basavanhally, Ajay, Feldman, Michael, Shih, Natalie, Mies, Carolyn, Tomaszewski, John, Ganesan, Shridar, Madabhushi, Anant
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Medknow Publications & Media Pvt Ltd 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3312707/
https://www.ncbi.nlm.nih.gov/pubmed/22811953
http://dx.doi.org/10.4103/2153-3539.92027
_version_ 1782227878926090240
author Basavanhally, Ajay
Feldman, Michael
Shih, Natalie
Mies, Carolyn
Tomaszewski, John
Ganesan, Shridar
Madabhushi, Anant
author_facet Basavanhally, Ajay
Feldman, Michael
Shih, Natalie
Mies, Carolyn
Tomaszewski, John
Ganesan, Shridar
Madabhushi, Anant
author_sort Basavanhally, Ajay
collection PubMed
description In this paper, we attempt to quantify the prognostic information embedded in multi-parametric histologic biopsy images to predict disease aggressiveness in estrogen receptor-positive (ER+) breast cancers (BCa). The novel methodological contribution is in the use of a multi-field-of-view (multi-FOV) framework for integrating image-based information from differently stained histopathology slides. The multi-FOV approach involves a fixed image resolution while simultaneously integrating image descriptors from many FOVs corresponding to different sizes. For each study, the corresponding risk score (high scores reflecting aggressive disease and vice versa), predicted by a molecular assay (Oncotype DX), is available and serves as the surrogate ground truth for long-term patient outcome. Using the risk scores, a trained classifier is used to identify disease aggressiveness for each FOV size. The predictions for each FOV are then combined to yield the final prediction of disease aggressiveness (good, intermediate, or poor outcome). Independent multi-FOV classifiers are constructed for (1) 50 image features describing the spatial arrangement of cancer nuclei (via Voronoi diagram, Delaunay triangulation, and minimum spanning tree graphs) in H and E stained histopathology and (2) one image feature describing the vascular density in CD34 IHC stained histopathology. In a cohort of 29 patients, the multi-FOV classifiers obtained by combining information from the H and E and CD34 IHC stained channels were able to distinguish low- and high-risk patients with an accuracy of 0.91 ± 0.02 and a positive predictive value of 0.94 ± 0.10, suggesting that a purely image-based assay could potentially replace more expensive molecular assays for making disease prognostic predictions.
format Online
Article
Text
id pubmed-3312707
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher Medknow Publications & Media Pvt Ltd
record_format MEDLINE/PubMed
spelling pubmed-33127072012-07-18 Multi-field-of-view strategy for image-based outcome prediction of multi-parametric estrogen receptor-positive breast cancer histopathology: Comparison to Oncotype DX Basavanhally, Ajay Feldman, Michael Shih, Natalie Mies, Carolyn Tomaszewski, John Ganesan, Shridar Madabhushi, Anant J Pathol Inform Symposium - Original Research In this paper, we attempt to quantify the prognostic information embedded in multi-parametric histologic biopsy images to predict disease aggressiveness in estrogen receptor-positive (ER+) breast cancers (BCa). The novel methodological contribution is in the use of a multi-field-of-view (multi-FOV) framework for integrating image-based information from differently stained histopathology slides. The multi-FOV approach involves a fixed image resolution while simultaneously integrating image descriptors from many FOVs corresponding to different sizes. For each study, the corresponding risk score (high scores reflecting aggressive disease and vice versa), predicted by a molecular assay (Oncotype DX), is available and serves as the surrogate ground truth for long-term patient outcome. Using the risk scores, a trained classifier is used to identify disease aggressiveness for each FOV size. The predictions for each FOV are then combined to yield the final prediction of disease aggressiveness (good, intermediate, or poor outcome). Independent multi-FOV classifiers are constructed for (1) 50 image features describing the spatial arrangement of cancer nuclei (via Voronoi diagram, Delaunay triangulation, and minimum spanning tree graphs) in H and E stained histopathology and (2) one image feature describing the vascular density in CD34 IHC stained histopathology. In a cohort of 29 patients, the multi-FOV classifiers obtained by combining information from the H and E and CD34 IHC stained channels were able to distinguish low- and high-risk patients with an accuracy of 0.91 ± 0.02 and a positive predictive value of 0.94 ± 0.10, suggesting that a purely image-based assay could potentially replace more expensive molecular assays for making disease prognostic predictions. Medknow Publications & Media Pvt Ltd 2012-01-19 /pmc/articles/PMC3312707/ /pubmed/22811953 http://dx.doi.org/10.4103/2153-3539.92027 Text en Copyright: © 2011 Basavanhally A. http://creativecommons.org/licenses/by-nc-sa/3.0 This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Symposium - Original Research
Basavanhally, Ajay
Feldman, Michael
Shih, Natalie
Mies, Carolyn
Tomaszewski, John
Ganesan, Shridar
Madabhushi, Anant
Multi-field-of-view strategy for image-based outcome prediction of multi-parametric estrogen receptor-positive breast cancer histopathology: Comparison to Oncotype DX
title Multi-field-of-view strategy for image-based outcome prediction of multi-parametric estrogen receptor-positive breast cancer histopathology: Comparison to Oncotype DX
title_full Multi-field-of-view strategy for image-based outcome prediction of multi-parametric estrogen receptor-positive breast cancer histopathology: Comparison to Oncotype DX
title_fullStr Multi-field-of-view strategy for image-based outcome prediction of multi-parametric estrogen receptor-positive breast cancer histopathology: Comparison to Oncotype DX
title_full_unstemmed Multi-field-of-view strategy for image-based outcome prediction of multi-parametric estrogen receptor-positive breast cancer histopathology: Comparison to Oncotype DX
title_short Multi-field-of-view strategy for image-based outcome prediction of multi-parametric estrogen receptor-positive breast cancer histopathology: Comparison to Oncotype DX
title_sort multi-field-of-view strategy for image-based outcome prediction of multi-parametric estrogen receptor-positive breast cancer histopathology: comparison to oncotype dx
topic Symposium - Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3312707/
https://www.ncbi.nlm.nih.gov/pubmed/22811953
http://dx.doi.org/10.4103/2153-3539.92027
work_keys_str_mv AT basavanhallyajay multifieldofviewstrategyforimagebasedoutcomepredictionofmultiparametricestrogenreceptorpositivebreastcancerhistopathologycomparisontooncotypedx
AT feldmanmichael multifieldofviewstrategyforimagebasedoutcomepredictionofmultiparametricestrogenreceptorpositivebreastcancerhistopathologycomparisontooncotypedx
AT shihnatalie multifieldofviewstrategyforimagebasedoutcomepredictionofmultiparametricestrogenreceptorpositivebreastcancerhistopathologycomparisontooncotypedx
AT miescarolyn multifieldofviewstrategyforimagebasedoutcomepredictionofmultiparametricestrogenreceptorpositivebreastcancerhistopathologycomparisontooncotypedx
AT tomaszewskijohn multifieldofviewstrategyforimagebasedoutcomepredictionofmultiparametricestrogenreceptorpositivebreastcancerhistopathologycomparisontooncotypedx
AT ganesanshridar multifieldofviewstrategyforimagebasedoutcomepredictionofmultiparametricestrogenreceptorpositivebreastcancerhistopathologycomparisontooncotypedx
AT madabhushianant multifieldofviewstrategyforimagebasedoutcomepredictionofmultiparametricestrogenreceptorpositivebreastcancerhistopathologycomparisontooncotypedx