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Heritability and Genetic Correlations Explained by Common SNPs for Metabolic Syndrome Traits

We used a bivariate (multivariate) linear mixed-effects model to estimate the narrow-sense heritability (h(2)) and heritability explained by the common SNPs (h(g)(2)) for several metabolic syndrome (MetS) traits and the genetic correlation between pairs of traits for the Atherosclerosis Risk in Comm...

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Autores principales: Vattikuti, Shashaank, Guo, Juen, Chow, Carson C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3315484/
https://www.ncbi.nlm.nih.gov/pubmed/22479213
http://dx.doi.org/10.1371/journal.pgen.1002637
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author Vattikuti, Shashaank
Guo, Juen
Chow, Carson C.
author_facet Vattikuti, Shashaank
Guo, Juen
Chow, Carson C.
author_sort Vattikuti, Shashaank
collection PubMed
description We used a bivariate (multivariate) linear mixed-effects model to estimate the narrow-sense heritability (h(2)) and heritability explained by the common SNPs (h(g)(2)) for several metabolic syndrome (MetS) traits and the genetic correlation between pairs of traits for the Atherosclerosis Risk in Communities (ARIC) genome-wide association study (GWAS) population. MetS traits included body-mass index (BMI), waist-to-hip ratio (WHR), systolic blood pressure (SBP), fasting glucose (GLU), fasting insulin (INS), fasting trigylcerides (TG), and fasting high-density lipoprotein (HDL). We found the percentage of h(2) accounted for by common SNPs to be 58% of h(2) for height, 41% for BMI, 46% for WHR, 30% for GLU, 39% for INS, 34% for TG, 25% for HDL, and 80% for SBP. We confirmed prior reports for height and BMI using the ARIC population and independently in the Framingham Heart Study (FHS) population. We demonstrated that the multivariate model supported large genetic correlations between BMI and WHR and between TG and HDL. We also showed that the genetic correlations between the MetS traits are directly proportional to the phenotypic correlations.
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spelling pubmed-33154842012-04-04 Heritability and Genetic Correlations Explained by Common SNPs for Metabolic Syndrome Traits Vattikuti, Shashaank Guo, Juen Chow, Carson C. PLoS Genet Research Article We used a bivariate (multivariate) linear mixed-effects model to estimate the narrow-sense heritability (h(2)) and heritability explained by the common SNPs (h(g)(2)) for several metabolic syndrome (MetS) traits and the genetic correlation between pairs of traits for the Atherosclerosis Risk in Communities (ARIC) genome-wide association study (GWAS) population. MetS traits included body-mass index (BMI), waist-to-hip ratio (WHR), systolic blood pressure (SBP), fasting glucose (GLU), fasting insulin (INS), fasting trigylcerides (TG), and fasting high-density lipoprotein (HDL). We found the percentage of h(2) accounted for by common SNPs to be 58% of h(2) for height, 41% for BMI, 46% for WHR, 30% for GLU, 39% for INS, 34% for TG, 25% for HDL, and 80% for SBP. We confirmed prior reports for height and BMI using the ARIC population and independently in the Framingham Heart Study (FHS) population. We demonstrated that the multivariate model supported large genetic correlations between BMI and WHR and between TG and HDL. We also showed that the genetic correlations between the MetS traits are directly proportional to the phenotypic correlations. Public Library of Science 2012-03-29 /pmc/articles/PMC3315484/ /pubmed/22479213 http://dx.doi.org/10.1371/journal.pgen.1002637 Text en This is an open-access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication. https://creativecommons.org/publicdomain/zero/1.0/ This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration, which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.
spellingShingle Research Article
Vattikuti, Shashaank
Guo, Juen
Chow, Carson C.
Heritability and Genetic Correlations Explained by Common SNPs for Metabolic Syndrome Traits
title Heritability and Genetic Correlations Explained by Common SNPs for Metabolic Syndrome Traits
title_full Heritability and Genetic Correlations Explained by Common SNPs for Metabolic Syndrome Traits
title_fullStr Heritability and Genetic Correlations Explained by Common SNPs for Metabolic Syndrome Traits
title_full_unstemmed Heritability and Genetic Correlations Explained by Common SNPs for Metabolic Syndrome Traits
title_short Heritability and Genetic Correlations Explained by Common SNPs for Metabolic Syndrome Traits
title_sort heritability and genetic correlations explained by common snps for metabolic syndrome traits
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3315484/
https://www.ncbi.nlm.nih.gov/pubmed/22479213
http://dx.doi.org/10.1371/journal.pgen.1002637
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