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Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China
BACKGROUND: Tuberculosis (TB) is a serious health problem in Tibet where Tibetans are the major ethnic group. Although genotyping of Mycobacterium tuberculosis (M. tuberculosis) isolates is a valuable tool for TB control, our knowledge of population structure of M. tuberculosis circulating in Tibet...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3316506/ https://www.ncbi.nlm.nih.gov/pubmed/22479472 http://dx.doi.org/10.1371/journal.pone.0033904 |
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author | Dong, Haiyan Shi, Li Zhao, Xiuqin Sang, Ba Lv, Bing Liu, Zhiguang Wan, Kanglin |
author_facet | Dong, Haiyan Shi, Li Zhao, Xiuqin Sang, Ba Lv, Bing Liu, Zhiguang Wan, Kanglin |
author_sort | Dong, Haiyan |
collection | PubMed |
description | BACKGROUND: Tuberculosis (TB) is a serious health problem in Tibet where Tibetans are the major ethnic group. Although genotyping of Mycobacterium tuberculosis (M. tuberculosis) isolates is a valuable tool for TB control, our knowledge of population structure of M. tuberculosis circulating in Tibet is limited. METHODOLOGY/PRINCIPAL FINDINGS: In our study, a total of 576 M. tuberculosis isolates from Tibetans in Tibet, China, were analyzed via spoligotyping and 24-locus MIRU-VNTR. The Beijing genotype was the most prevalent family (90.63%, n = 522). Shared-type (ST) 1 was the most dominant genotype (88.89%, n = 512). We found that there was no association between the Beijing genotype and sex, age and treatment status. In this sample collection, 7 of the 24 MIRU-VNTR loci were highly or moderately discriminative according to their Hunter-Gaston discriminatory index. An informative set of 12 loci had similar discriminatory power with 24 loci set. CONCLUSIONS/SIGNIFICANCE: The population structure of M. tuberculosis isolates in Tibetans is homogeneous and dominated by Beijing genotype. The analysis of 24-locus MIRU-VNTR data might be useful to select appropriate VNTR loci for the genotyping of M. tuberculosis. |
format | Online Article Text |
id | pubmed-3316506 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-33165062012-04-04 Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China Dong, Haiyan Shi, Li Zhao, Xiuqin Sang, Ba Lv, Bing Liu, Zhiguang Wan, Kanglin PLoS One Research Article BACKGROUND: Tuberculosis (TB) is a serious health problem in Tibet where Tibetans are the major ethnic group. Although genotyping of Mycobacterium tuberculosis (M. tuberculosis) isolates is a valuable tool for TB control, our knowledge of population structure of M. tuberculosis circulating in Tibet is limited. METHODOLOGY/PRINCIPAL FINDINGS: In our study, a total of 576 M. tuberculosis isolates from Tibetans in Tibet, China, were analyzed via spoligotyping and 24-locus MIRU-VNTR. The Beijing genotype was the most prevalent family (90.63%, n = 522). Shared-type (ST) 1 was the most dominant genotype (88.89%, n = 512). We found that there was no association between the Beijing genotype and sex, age and treatment status. In this sample collection, 7 of the 24 MIRU-VNTR loci were highly or moderately discriminative according to their Hunter-Gaston discriminatory index. An informative set of 12 loci had similar discriminatory power with 24 loci set. CONCLUSIONS/SIGNIFICANCE: The population structure of M. tuberculosis isolates in Tibetans is homogeneous and dominated by Beijing genotype. The analysis of 24-locus MIRU-VNTR data might be useful to select appropriate VNTR loci for the genotyping of M. tuberculosis. Public Library of Science 2012-03-30 /pmc/articles/PMC3316506/ /pubmed/22479472 http://dx.doi.org/10.1371/journal.pone.0033904 Text en Dong et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Dong, Haiyan Shi, Li Zhao, Xiuqin Sang, Ba Lv, Bing Liu, Zhiguang Wan, Kanglin Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China |
title | Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China |
title_full | Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China |
title_fullStr | Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China |
title_full_unstemmed | Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China |
title_short | Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China |
title_sort | genetic diversity of mycobacterium tuberculosis isolates from tibetans in tibet, china |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3316506/ https://www.ncbi.nlm.nih.gov/pubmed/22479472 http://dx.doi.org/10.1371/journal.pone.0033904 |
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