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Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China

BACKGROUND: Tuberculosis (TB) is a serious health problem in Tibet where Tibetans are the major ethnic group. Although genotyping of Mycobacterium tuberculosis (M. tuberculosis) isolates is a valuable tool for TB control, our knowledge of population structure of M. tuberculosis circulating in Tibet...

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Autores principales: Dong, Haiyan, Shi, Li, Zhao, Xiuqin, Sang, Ba, Lv, Bing, Liu, Zhiguang, Wan, Kanglin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3316506/
https://www.ncbi.nlm.nih.gov/pubmed/22479472
http://dx.doi.org/10.1371/journal.pone.0033904
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author Dong, Haiyan
Shi, Li
Zhao, Xiuqin
Sang, Ba
Lv, Bing
Liu, Zhiguang
Wan, Kanglin
author_facet Dong, Haiyan
Shi, Li
Zhao, Xiuqin
Sang, Ba
Lv, Bing
Liu, Zhiguang
Wan, Kanglin
author_sort Dong, Haiyan
collection PubMed
description BACKGROUND: Tuberculosis (TB) is a serious health problem in Tibet where Tibetans are the major ethnic group. Although genotyping of Mycobacterium tuberculosis (M. tuberculosis) isolates is a valuable tool for TB control, our knowledge of population structure of M. tuberculosis circulating in Tibet is limited. METHODOLOGY/PRINCIPAL FINDINGS: In our study, a total of 576 M. tuberculosis isolates from Tibetans in Tibet, China, were analyzed via spoligotyping and 24-locus MIRU-VNTR. The Beijing genotype was the most prevalent family (90.63%, n = 522). Shared-type (ST) 1 was the most dominant genotype (88.89%, n = 512). We found that there was no association between the Beijing genotype and sex, age and treatment status. In this sample collection, 7 of the 24 MIRU-VNTR loci were highly or moderately discriminative according to their Hunter-Gaston discriminatory index. An informative set of 12 loci had similar discriminatory power with 24 loci set. CONCLUSIONS/SIGNIFICANCE: The population structure of M. tuberculosis isolates in Tibetans is homogeneous and dominated by Beijing genotype. The analysis of 24-locus MIRU-VNTR data might be useful to select appropriate VNTR loci for the genotyping of M. tuberculosis.
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spelling pubmed-33165062012-04-04 Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China Dong, Haiyan Shi, Li Zhao, Xiuqin Sang, Ba Lv, Bing Liu, Zhiguang Wan, Kanglin PLoS One Research Article BACKGROUND: Tuberculosis (TB) is a serious health problem in Tibet where Tibetans are the major ethnic group. Although genotyping of Mycobacterium tuberculosis (M. tuberculosis) isolates is a valuable tool for TB control, our knowledge of population structure of M. tuberculosis circulating in Tibet is limited. METHODOLOGY/PRINCIPAL FINDINGS: In our study, a total of 576 M. tuberculosis isolates from Tibetans in Tibet, China, were analyzed via spoligotyping and 24-locus MIRU-VNTR. The Beijing genotype was the most prevalent family (90.63%, n = 522). Shared-type (ST) 1 was the most dominant genotype (88.89%, n = 512). We found that there was no association between the Beijing genotype and sex, age and treatment status. In this sample collection, 7 of the 24 MIRU-VNTR loci were highly or moderately discriminative according to their Hunter-Gaston discriminatory index. An informative set of 12 loci had similar discriminatory power with 24 loci set. CONCLUSIONS/SIGNIFICANCE: The population structure of M. tuberculosis isolates in Tibetans is homogeneous and dominated by Beijing genotype. The analysis of 24-locus MIRU-VNTR data might be useful to select appropriate VNTR loci for the genotyping of M. tuberculosis. Public Library of Science 2012-03-30 /pmc/articles/PMC3316506/ /pubmed/22479472 http://dx.doi.org/10.1371/journal.pone.0033904 Text en Dong et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Dong, Haiyan
Shi, Li
Zhao, Xiuqin
Sang, Ba
Lv, Bing
Liu, Zhiguang
Wan, Kanglin
Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China
title Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China
title_full Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China
title_fullStr Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China
title_full_unstemmed Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China
title_short Genetic Diversity of Mycobacterium tuberculosis Isolates from Tibetans in Tibet, China
title_sort genetic diversity of mycobacterium tuberculosis isolates from tibetans in tibet, china
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3316506/
https://www.ncbi.nlm.nih.gov/pubmed/22479472
http://dx.doi.org/10.1371/journal.pone.0033904
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